Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0728
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.8  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   2.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.6  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 647 DLFLNSHGHILSLLEELSKTHSSVEQLL 564
           DLF N H HI ++ + +  T+  + + +
Sbjct: 50  DLFDNVHNHIQNIFKIIKSTNEKITRYI 77


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 647 DLFLNSHGHILSLLEELSKTHSSVEQLL 564
           DLF N H HI ++ + +  T+  + + +
Sbjct: 33  DLFDNVHNHIQNIFKIIKSTNEKITRYI 60


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 149 RSLPSDVSTAASSPRP*GYPGD 214
           + +   + TA  +P P G PGD
Sbjct: 319 QKIAESMKTARENPGPPGVPGD 340


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 149 RSLPSDVSTAASSPRP*GYPGD 214
           + +   + TA  +P P G PGD
Sbjct: 319 QKIAESMKTARENPGPPGVPGD 340


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 149 RSLPSDVSTAASSPRP*GYPGD 214
           + +   + TA  +P P G PGD
Sbjct: 258 QKIAESMKTARENPGPPGVPGD 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,541
Number of Sequences: 438
Number of extensions: 4505
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)