BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= mg--0728 (708 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 149 2e-36 At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 42 5e-04 At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 42 5e-04 At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 42 5e-04 At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 42 5e-04 At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 34 0.11 At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 32 0.43 At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 30 1.3 At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,... 29 2.3 At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,... 29 2.3 At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa s... 28 5.3 At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa s... 28 5.3 At5g46540.1 68418.m05730 ABC transporter family protein contains... 28 7.0 At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot... 28 7.0 At5g39340.1 68418.m04764 two-component phosphorelay mediator 2 (... 27 9.2 At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 27 9.2 At4g14760.1 68417.m02271 M protein repeat-containing protein con... 27 9.2 At4g00500.2 68417.m00069 lipase class 3 family protein / calmodu... 27 9.2 At4g00500.1 68417.m00068 lipase class 3 family protein / calmodu... 27 9.2 At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR ... 27 9.2 >At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial, putative very strong similarity to SP|P23413 ATP synthase alpha chain, mitochondrial (EC 3.6.3.14) {Brassica campestris}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain Length = 777 Score = 149 bits (361), Expect = 2e-36 Identities = 75/84 (89%), Positives = 78/84 (92%) Frame = +1 Query: 259 SDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVS 438 SD+ G GSLTALPVIETQAGDVSAYIPTNVISITDGQI LETELFY+GIRPAINVGLSVS Sbjct: 586 SDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVS 645 Query: 439 RVGSAAQTKAMKQVAGSMKLELAR 510 RVGSAAQ KAMKQV GS KLELA+ Sbjct: 646 RVGSAAQLKAMKQVCGSSKLELAQ 669 Score = 127 bits (307), Expect = 6e-30 Identities = 58/65 (89%), Positives = 63/65 (96%) Frame = +3 Query: 6 YTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRR 185 Y+I+V+ATASD APLQ+LAPYSGCAMGE+FRDNG HALIIYDDLSKQAVAYRQMSLLLRR Sbjct: 501 YSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRR 560 Query: 186 PPGRE 200 PPGRE Sbjct: 561 PPGRE 565 Score = 91.1 bits (216), Expect = 7e-19 Identities = 42/69 (60%), Positives = 52/69 (75%) Frame = +3 Query: 501 IGSYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHL 680 + YREVAAFAQFGSDLDAATQ LLNRG RLTE+ KQ QY P+ IE+Q+ +IY V G Sbjct: 667 LAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFC 726 Query: 681 DKLDPSKIT 707 D++ +I+ Sbjct: 727 DRMPLDRIS 735 Score = 39.5 bits (88), Expect = 0.002 Identities = 16/18 (88%), Positives = 18/18 (100%) Frame = +2 Query: 203 YPGDVFYLHSRLLERAAR 256 +PGDVFYLHSRLLERAA+ Sbjct: 567 FPGDVFYLHSRLLERAAK 584 >At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative very strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain Length = 487 Score = 41.5 bits (93), Expect = 5e-04 Identities = 22/65 (33%), Positives = 38/65 (58%) Frame = +1 Query: 277 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 456 GS+T +P++ D++ P IT+GQI+++ +L + I P INV S+SR+ +A Sbjct: 323 GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSA 382 Query: 457 QTKAM 471 + M Sbjct: 383 IGEGM 387 Score = 31.9 bits (69), Expect = 0.43 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = +3 Query: 30 ASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 197 A+D + + P E+ + GKH L+I D+S A A R++S PGR Sbjct: 241 ANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGR 297 >At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative very strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain Length = 487 Score = 41.5 bits (93), Expect = 5e-04 Identities = 22/65 (33%), Positives = 38/65 (58%) Frame = +1 Query: 277 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 456 GS+T +P++ D++ P IT+GQI+++ +L + I P INV S+SR+ +A Sbjct: 323 GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSA 382 Query: 457 QTKAM 471 + M Sbjct: 383 IGEGM 387 Score = 31.9 bits (69), Expect = 0.43 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = +3 Query: 30 ASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 197 A+D + + P E+ + GKH L+I D+S A A R++S PGR Sbjct: 241 ANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGR 297 >At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit identical to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana} Length = 486 Score = 41.5 bits (93), Expect = 5e-04 Identities = 22/65 (33%), Positives = 38/65 (58%) Frame = +1 Query: 277 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 456 GS+T +P++ D++ P IT+GQI+++ +L + I P INV S+SR+ +A Sbjct: 322 GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSA 381 Query: 457 QTKAM 471 + M Sbjct: 382 IGEGM 386 Score = 31.9 bits (69), Expect = 0.43 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = +3 Query: 30 ASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 197 A+D + + P E+ + GKH L+I D+S A A R++S PGR Sbjct: 240 ANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGR 296 >At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF02874: ATP synthase alpha/beta family beta-barrel domain Length = 485 Score = 41.5 bits (93), Expect = 5e-04 Identities = 22/65 (33%), Positives = 38/65 (58%) Frame = +1 Query: 277 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 456 GS+T +P++ D++ P IT+GQI+++ +L + I P INV S+SR+ +A Sbjct: 321 GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSA 380 Query: 457 QTKAM 471 + M Sbjct: 381 IGEGM 385 >At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A / V-ATPase A subunit / vacuolar proton pump alpha subunit / V-ATPase 69 kDa subunit identical to SP|O23654 Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa subunit) {Arabidopsis thaliana} Length = 623 Score = 33.9 bits (74), Expect = 0.11 Identities = 18/61 (29%), Positives = 33/61 (54%) Frame = +3 Query: 9 TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRP 188 T +V+ T++ + + Y+G + E+FRD G + ++ D S+ A A R++S L Sbjct: 312 TTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEM 371 Query: 189 P 191 P Sbjct: 372 P 372 >At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF02874: ATP synthase alpha/beta family beta-barrel domain Length = 330 Score = 31.9 bits (69), Expect = 0.43 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = +3 Query: 30 ASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 197 A+D + + P E+ + GKH L+I D+S A A R++S PGR Sbjct: 241 ANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGR 297 >At5g06000.1 68418.m00665 eukaryotic translation initiation factor 3G, putative / eIF3g, putative similar to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI:12407751; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 276 Score = 30.3 bits (65), Expect = 1.3 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = -2 Query: 329 ADTSPAWVSMTGKAVREPPPILSDI*RHAQADGSEDRTRHQDN 201 A+TS + ++ TG+A PP + R +A GS+ R+RH +N Sbjct: 134 AETSTSTITGTGRAAYVPPSMREGADR--KAGGSDMRSRHDEN 174 >At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase, putative similar to UDP-glucose:sterol glucosyltransferase [Arabidopsis thaliana] GI:2462931; contains Pfam profile: PF03033 glycosyltransferase family 28 N-terminal domain Length = 615 Score = 29.5 bits (63), Expect = 2.3 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Frame = +1 Query: 307 TQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA-INVG-LSVSRVGSAAQTKAMKQV 480 T A + A PT ++ Q F ++ KG+ PA I + LSV + S+ + +V Sbjct: 487 TTATGLKAGCPTTIVPFFGDQFFWGDRIYEKGLGPAPIPIAQLSVENLSSSIRFMLQPEV 546 Query: 481 AGSMKLELARTVRSQ 525 S +ELA+ + ++ Sbjct: 547 K-SQVMELAKVLENE 560 >At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase, putative similar to UDP-glucose:sterol glucosyltransferase [Arabidopsis thaliana] GI:2462931; contains Pfam profile: PF03033 glycosyltransferase family 28 N-terminal domain Length = 615 Score = 29.5 bits (63), Expect = 2.3 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Frame = +1 Query: 307 TQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA-INVG-LSVSRVGSAAQTKAMKQV 480 T A + A PT ++ Q F ++ KG+ PA I + LSV + S+ + +V Sbjct: 487 TTATGLKAGCPTTIVPFFGDQFFWGDRIYEKGLGPAPIPIAQLSVENLSSSIRFMLQPEV 546 Query: 481 AGSMKLELARTVRSQ 525 S +ELA+ + ++ Sbjct: 547 K-SQVMELAKVLENE 560 >At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) identical to SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD) (CI-28.5KD) {Arabidopsis thaliana} Length = 222 Score = 28.3 bits (60), Expect = 5.3 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 Query: 393 LQRYPTSHQRRSVCIACRIC 452 L+RYPT +R CIAC++C Sbjct: 113 LRRYPTGEER---CIACKLC 129 >At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative very strong similarity to SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD) (CI-28.5KD) {Arabidopsis thaliana}; contains Pfam profile PF00037: iron-sulfur cluster-binding protein Length = 222 Score = 28.3 bits (60), Expect = 5.3 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 Query: 393 LQRYPTSHQRRSVCIACRIC 452 L+RYPT +R CIAC++C Sbjct: 113 LRRYPTGEER---CIACKLC 129 >At5g46540.1 68418.m05730 ABC transporter family protein contains Pfam profile: PF00005 ABC transporter; similar to multidrug-resistant protein CjMDR1 GI:14715462 from [Coptis japonica] Length = 1248 Score = 27.9 bits (59), Expect = 7.0 Identities = 16/65 (24%), Positives = 28/65 (43%) Frame = +3 Query: 468 YEAGGRFHEAGIGSYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQV 647 Y G + +GS R V AF + ++L + ++KQG Y + I + Sbjct: 212 YTEAGNVVQQAVGSIRTVVAFTGEKQSMGKYEKKL---EIAYKSMVKQGLYSGLGIGIMM 268 Query: 648 AIIYC 662 ++YC Sbjct: 269 VVVYC 273 >At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein similar to SP|O35134 DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa subunit) (RPA194) {Mus musculus}; contains InterPro accession IPR000722: RNA polymerase, alpha subunit Length = 1670 Score = 27.9 bits (59), Expect = 7.0 Identities = 20/69 (28%), Positives = 30/69 (43%) Frame = -2 Query: 608 LEELSKTHSSVEQLLCSGIQVRTELGKSCDLTVRANSSFMEPATCFIALV*AADPTRDTD 429 L K ++ + L S TELGK+CD+ + I LV PT Sbjct: 515 LPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLV-NRQPT--LH 571 Query: 428 RPTLMAGRI 402 +P+LMA ++ Sbjct: 572 KPSLMAHKV 580 >At5g39340.1 68418.m04764 two-component phosphorelay mediator 2 (HP2) nearly identical to ATHP2 [Arabidopsis thaliana] GI:4156243 Length = 155 Score = 27.5 bits (58), Expect = 9.2 Identities = 16/60 (26%), Positives = 28/60 (46%) Frame = +3 Query: 423 RSVCIACRICCSDQGYEAGGRFHEAGIGSYREVAAFAQFGSDLDAATQQLLNRGMRLTEL 602 + +C+ + CC Q YE R + Y+ + A Q DL QQ++ G R+ ++ Sbjct: 97 KGLCVTLKECCDSQNYEGCVRCLQQVDIEYKTLKAKLQ---DLFNLEQQIVQAGGRIPQV 153 >At5g17730.1 68418.m02079 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 470 Score = 27.5 bits (58), Expect = 9.2 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +1 Query: 520 SQLLPSSVLTWMP-LHSSCSTEECVLLSSSSKDNMCPWLLR 639 S L S +LT + L SSC E V+ +++ K+ + P LLR Sbjct: 327 SMLTLSGLLTCIDGLWSSCGDERIVIFTTTHKERLDPALLR 367 >At4g14760.1 68417.m02271 M protein repeat-containing protein contains Pfam profile: PF02370 M protein repeat Length = 1676 Score = 27.5 bits (58), Expect = 9.2 Identities = 9/41 (21%), Positives = 23/41 (56%) Frame = -2 Query: 692 VQLVEVTADTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQ 570 ++L+E AD+ D++ ++ L+EEL + + ++ + Sbjct: 9 IKLIEADADSFARRADMYFKKRPELMKLVEELYRAYRALAE 49 >At4g00500.2 68417.m00069 lipase class 3 family protein / calmodulin-binding heat-shock protein-related Length = 460 Score = 27.5 bits (58), Expect = 9.2 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = -3 Query: 580 LLSSCCVAASKSEPNWAKAATSRYEPIP 497 L C +A NW A + +EPIP Sbjct: 22 LWKKCLYSAGHESENWGLATSDEFEPIP 49 >At4g00500.1 68417.m00068 lipase class 3 family protein / calmodulin-binding heat-shock protein-related Length = 460 Score = 27.5 bits (58), Expect = 9.2 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = -3 Query: 580 LLSSCCVAASKSEPNWAKAATSRYEPIP 497 L C +A NW A + +EPIP Sbjct: 22 LWKKCLYSAGHESENWGLATSDEFEPIP 49 >At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. Length = 906 Score = 27.5 bits (58), Expect = 9.2 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +3 Query: 108 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREVILVT 215 K ALI++DDL K+ YR + R G +V+L + Sbjct: 260 KKALIVFDDLWKREDWYRIAPMFPERKAGWKVLLTS 295 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,403,141 Number of Sequences: 28952 Number of extensions: 348928 Number of successful extensions: 986 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 950 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 986 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1526202912 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -