SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0728
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial...   149   2e-36
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati...    42   5e-04
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati...    42   5e-04
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP...    42   5e-04
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati...    42   5e-04
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit...    34   0.11 
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati...    32   0.43 
At5g06000.1 68418.m00665 eukaryotic translation initiation facto...    30   1.3  
At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,...    29   2.3  
At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,...    29   2.3  
At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa s...    28   5.3  
At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa s...    28   5.3  
At5g46540.1 68418.m05730 ABC transporter family protein contains...    28   7.0  
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot...    28   7.0  
At5g39340.1 68418.m04764 two-component phosphorelay mediator 2 (...    27   9.2  
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains...    27   9.2  
At4g14760.1 68417.m02271 M protein repeat-containing protein con...    27   9.2  
At4g00500.2 68417.m00069 lipase class 3 family protein / calmodu...    27   9.2  
At4g00500.1 68417.m00068 lipase class 3 family protein / calmodu...    27   9.2  
At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR ...    27   9.2  

>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
           putative very strong similarity to SP|P23413 ATP
           synthase alpha chain, mitochondrial (EC 3.6.3.14)
           {Brassica campestris}; contains Pfam profiles PF00006:
           ATP synthase alpha/beta family nucleotide-binding
           domain, PF00306: ATP synthase ab C terminal, PF02874:
           ATP synthase alpha/beta family beta-barrel domain
          Length = 777

 Score =  149 bits (361), Expect = 2e-36
 Identities = 75/84 (89%), Positives = 78/84 (92%)
 Frame = +1

Query: 259 SDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVS 438
           SD+ G GSLTALPVIETQAGDVSAYIPTNVISITDGQI LETELFY+GIRPAINVGLSVS
Sbjct: 586 SDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVS 645

Query: 439 RVGSAAQTKAMKQVAGSMKLELAR 510
           RVGSAAQ KAMKQV GS KLELA+
Sbjct: 646 RVGSAAQLKAMKQVCGSSKLELAQ 669



 Score =  127 bits (307), Expect = 6e-30
 Identities = 58/65 (89%), Positives = 63/65 (96%)
 Frame = +3

Query: 6   YTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRR 185
           Y+I+V+ATASD APLQ+LAPYSGCAMGE+FRDNG HALIIYDDLSKQAVAYRQMSLLLRR
Sbjct: 501 YSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRR 560

Query: 186 PPGRE 200
           PPGRE
Sbjct: 561 PPGRE 565



 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 42/69 (60%), Positives = 52/69 (75%)
 Frame = +3

Query: 501 IGSYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHL 680
           +  YREVAAFAQFGSDLDAATQ LLNRG RLTE+ KQ QY P+ IE+Q+ +IY  V G  
Sbjct: 667 LAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFC 726

Query: 681 DKLDPSKIT 707
           D++   +I+
Sbjct: 727 DRMPLDRIS 735



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +2

Query: 203 YPGDVFYLHSRLLERAAR 256
           +PGDVFYLHSRLLERAA+
Sbjct: 567 FPGDVFYLHSRLLERAAK 584


>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
           / V-ATPase B subunit, putative / vacuolar proton pump B
           subunit, putative / V-ATPase 57 kDa subunit, putative
           very strong similarity to SP|P11574 Vacuolar ATP
           synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
           (Vacuolar proton pump B subunit) (V-ATPase 57 kDa
           subunit) {Arabidopsis thaliana}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain
          Length = 487

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 22/65 (33%), Positives = 38/65 (58%)
 Frame = +1

Query: 277 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 456
           GS+T +P++     D++   P     IT+GQI+++ +L  + I P INV  S+SR+  +A
Sbjct: 323 GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSA 382

Query: 457 QTKAM 471
             + M
Sbjct: 383 IGEGM 387



 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 30  ASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 197
           A+D    + + P       E+   + GKH L+I  D+S  A A R++S      PGR
Sbjct: 241 ANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGR 297


>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
           / V-ATPase B subunit, putative / vacuolar proton pump B
           subunit, putative / V-ATPase 57 kDa subunit, putative
           very strong similarity to SP|P11574 Vacuolar ATP
           synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
           (Vacuolar proton pump B subunit) (V-ATPase 57 kDa
           subunit) {Arabidopsis thaliana}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain
          Length = 487

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 22/65 (33%), Positives = 38/65 (58%)
 Frame = +1

Query: 277 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 456
           GS+T +P++     D++   P     IT+GQI+++ +L  + I P INV  S+SR+  +A
Sbjct: 323 GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSA 382

Query: 457 QTKAM 471
             + M
Sbjct: 383 IGEGM 387



 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 30  ASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 197
           A+D    + + P       E+   + GKH L+I  D+S  A A R++S      PGR
Sbjct: 241 ANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGR 297


>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
           B subunit / vacuolar proton pump B subunit / V-ATPase 57
           kDa subunit identical to SP|P11574 Vacuolar ATP synthase
           subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
           proton pump B subunit) (V-ATPase 57 kDa subunit)
           {Arabidopsis thaliana}
          Length = 486

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 22/65 (33%), Positives = 38/65 (58%)
 Frame = +1

Query: 277 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 456
           GS+T +P++     D++   P     IT+GQI+++ +L  + I P INV  S+SR+  +A
Sbjct: 322 GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSA 381

Query: 457 QTKAM 471
             + M
Sbjct: 382 IGEGM 386



 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 30  ASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 197
           A+D    + + P       E+   + GKH L+I  D+S  A A R++S      PGR
Sbjct: 240 ANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGR 296


>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
           / V-ATPase B subunit, putative / vacuolar proton pump B
           subunit, putative / V-ATPase 57 kDa subunit, putative
           strong similarity to SP|P11574 Vacuolar ATP synthase
           subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
           proton pump B subunit) (V-ATPase 57 kDa subunit)
           {Arabidopsis thaliana}; contains Pfam profiles PF00006:
           ATP synthase alpha/beta family nucleotide-binding
           domain, PF02874: ATP synthase alpha/beta family
           beta-barrel domain
          Length = 485

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 22/65 (33%), Positives = 38/65 (58%)
 Frame = +1

Query: 277 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 456
           GS+T +P++     D++   P     IT+GQI+++ +L  + I P INV  S+SR+  +A
Sbjct: 321 GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSA 380

Query: 457 QTKAM 471
             + M
Sbjct: 381 IGEGM 385


>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
           / V-ATPase A subunit / vacuolar proton pump alpha
           subunit / V-ATPase 69 kDa subunit identical to SP|O23654
           Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
           (V-ATPase A subunit) (Vacuolar proton pump alpha
           subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
           thaliana}
          Length = 623

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = +3

Query: 9   TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRP 188
           T +V+ T++     +  + Y+G  + E+FRD G +  ++ D  S+ A A R++S  L   
Sbjct: 312 TTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEM 371

Query: 189 P 191
           P
Sbjct: 372 P 372


>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
           / V-ATPase B subunit, putative / vacuolar proton pump B
           subunit, putative / V-ATPase 57 kDa subunit, putative
           strong similarity to SP|P11574 Vacuolar ATP synthase
           subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
           proton pump B subunit) (V-ATPase 57 kDa subunit)
           {Arabidopsis thaliana}; contains Pfam profiles PF00006:
           ATP synthase alpha/beta family nucleotide-binding
           domain, PF02874: ATP synthase alpha/beta family
           beta-barrel domain
          Length = 330

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 30  ASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 197
           A+D    + + P       E+   + GKH L+I  D+S  A A R++S      PGR
Sbjct: 241 ANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGR 297


>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
           3G, putative / eIF3g, putative similar to eukaryotic
           translation initiation factor 3g [Arabidopsis thaliana]
           GI:12407751; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 276

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -2

Query: 329 ADTSPAWVSMTGKAVREPPPILSDI*RHAQADGSEDRTRHQDN 201
           A+TS + ++ TG+A   PP +     R  +A GS+ R+RH +N
Sbjct: 134 AETSTSTITGTGRAAYVPPSMREGADR--KAGGSDMRSRHDEN 174


>At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,
           putative similar to UDP-glucose:sterol
           glucosyltransferase [Arabidopsis thaliana] GI:2462931;
           contains Pfam profile: PF03033 glycosyltransferase
           family 28 N-terminal domain
          Length = 615

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +1

Query: 307 TQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA-INVG-LSVSRVGSAAQTKAMKQV 480
           T A  + A  PT ++     Q F    ++ KG+ PA I +  LSV  + S+ +     +V
Sbjct: 487 TTATGLKAGCPTTIVPFFGDQFFWGDRIYEKGLGPAPIPIAQLSVENLSSSIRFMLQPEV 546

Query: 481 AGSMKLELARTVRSQ 525
             S  +ELA+ + ++
Sbjct: 547 K-SQVMELAKVLENE 560


>At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,
           putative similar to UDP-glucose:sterol
           glucosyltransferase [Arabidopsis thaliana] GI:2462931;
           contains Pfam profile: PF03033 glycosyltransferase
           family 28 N-terminal domain
          Length = 615

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +1

Query: 307 TQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA-INVG-LSVSRVGSAAQTKAMKQV 480
           T A  + A  PT ++     Q F    ++ KG+ PA I +  LSV  + S+ +     +V
Sbjct: 487 TTATGLKAGCPTTIVPFFGDQFFWGDRIYEKGLGPAPIPIAQLSVENLSSSIRFMLQPEV 546

Query: 481 AGSMKLELARTVRSQ 525
             S  +ELA+ + ++
Sbjct: 547 K-SQVMELAKVLENE 560


>At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial (TYKY) identical to SP|Q42599
           NADH-ubiquinone oxidoreductase 23 kDa subunit,
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
           (CI-28.5KD) {Arabidopsis thaliana}
          Length = 222

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 393 LQRYPTSHQRRSVCIACRIC 452
           L+RYPT  +R   CIAC++C
Sbjct: 113 LRRYPTGEER---CIACKLC 129


>At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial, putative very strong similarity
           to SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial precursor (EC 1.6.5.3) (EC
           1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
           (CI-28.5KD) {Arabidopsis thaliana}; contains Pfam
           profile PF00037: iron-sulfur cluster-binding protein
          Length = 222

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 393 LQRYPTSHQRRSVCIACRIC 452
           L+RYPT  +R   CIAC++C
Sbjct: 113 LRRYPTGEER---CIACKLC 129


>At5g46540.1 68418.m05730 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter; similar to
           multidrug-resistant protein CjMDR1 GI:14715462 from
           [Coptis japonica]
          Length = 1248

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 468 YEAGGRFHEAGIGSYREVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQV 647
           Y   G   +  +GS R V AF      +    ++L    +    ++KQG Y  + I   +
Sbjct: 212 YTEAGNVVQQAVGSIRTVVAFTGEKQSMGKYEKKL---EIAYKSMVKQGLYSGLGIGIMM 268

Query: 648 AIIYC 662
            ++YC
Sbjct: 269 VVVYC 273


>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
           similar to SP|O35134 DNA-directed RNA polymerase I
           largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
           subunit) (RPA194) {Mus musculus}; contains InterPro
           accession IPR000722: RNA polymerase, alpha subunit
          Length = 1670

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = -2

Query: 608 LEELSKTHSSVEQLLCSGIQVRTELGKSCDLTVRANSSFMEPATCFIALV*AADPTRDTD 429
           L    K   ++ + L S     TELGK+CD+     +         I LV    PT    
Sbjct: 515 LPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLV-NRQPT--LH 571

Query: 428 RPTLMAGRI 402
           +P+LMA ++
Sbjct: 572 KPSLMAHKV 580


>At5g39340.1 68418.m04764 two-component phosphorelay mediator 2
           (HP2) nearly identical to ATHP2 [Arabidopsis thaliana]
           GI:4156243
          Length = 155

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +3

Query: 423 RSVCIACRICCSDQGYEAGGRFHEAGIGSYREVAAFAQFGSDLDAATQQLLNRGMRLTEL 602
           + +C+  + CC  Q YE   R  +     Y+ + A  Q   DL    QQ++  G R+ ++
Sbjct: 97  KGLCVTLKECCDSQNYEGCVRCLQQVDIEYKTLKAKLQ---DLFNLEQQIVQAGGRIPQV 153


>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 470

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 520 SQLLPSSVLTWMP-LHSSCSTEECVLLSSSSKDNMCPWLLR 639
           S L  S +LT +  L SSC  E  V+ +++ K+ + P LLR
Sbjct: 327 SMLTLSGLLTCIDGLWSSCGDERIVIFTTTHKERLDPALLR 367


>At4g14760.1 68417.m02271 M protein repeat-containing protein
           contains Pfam profile: PF02370 M protein repeat
          Length = 1676

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = -2

Query: 692 VQLVEVTADTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQ 570
           ++L+E  AD+     D++      ++ L+EEL + + ++ +
Sbjct: 9   IKLIEADADSFARRADMYFKKRPELMKLVEELYRAYRALAE 49


>At4g00500.2 68417.m00069 lipase class 3 family protein /
           calmodulin-binding heat-shock protein-related 
          Length = 460

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 580 LLSSCCVAASKSEPNWAKAATSRYEPIP 497
           L   C  +A     NW  A +  +EPIP
Sbjct: 22  LWKKCLYSAGHESENWGLATSDEFEPIP 49


>At4g00500.1 68417.m00068 lipase class 3 family protein /
           calmodulin-binding heat-shock protein-related 
          Length = 460

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 580 LLSSCCVAASKSEPNWAKAATSRYEPIP 497
           L   C  +A     NW  A +  +EPIP
Sbjct: 22  LWKKCLYSAGHESENWGLATSDEFEPIP 49


>At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 108 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREVILVT 215
           K ALI++DDL K+   YR   +   R  G +V+L +
Sbjct: 260 KKALIVFDDLWKREDWYRIAPMFPERKAGWKVLLTS 295


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,141
Number of Sequences: 28952
Number of extensions: 348928
Number of successful extensions: 986
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -