Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0727
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   2.8  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    27   2.8  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   3.6  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    27   3.6  

>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +1

Query: 538 ELGLPSRCDQRVLLRNFRNQQ---YRSGFHHLRFRIQ 639
           E GL S CD    L+NF N Q   +  G++  +  IQ
Sbjct: 296 ETGLSSTCDVNCSLQNFANYQDFYFSKGYNSYQIEIQ 332


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 176 EQSTLVEPPSSTAIGDSRLLIALL 247
           +Q+ L+ PPSS+  GD+ LL A L
Sbjct: 593 KQTPLLTPPSSSGFGDNLLLTARL 616


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 490 PPVGEELDQWYRS*KYELGLP 552
           P  G ++ QWYR+  + LGLP
Sbjct: 401 PFTGVDMHQWYRAGYFPLGLP 421


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 533 NMNWVFLRGVTNAFCSEIFVINNIVQDSTICASGYNVTSQSTCQGDSGGGL 685
           N++      V NAF + +F     +Q S + AS  NVTS++T  G     L
Sbjct: 189 NLSITLYAWVGNAFKTHVFPQLKQIQVSDLEASFQNVTSRTTTGGHISNSL 239


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 104 ILAPALTFSTKVRAGSADTTATPAIATRS 18
           + +PA  +S     GS DTTA P+I  RS
Sbjct: 310 VSSPATQYSASDYLGSNDTTARPSIFGRS 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,676
Number of Sequences: 5004
Number of extensions: 58817
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)