Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0727
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58690.1 68418.m07353 phosphoinositide-specific phospholipase...    30   1.8  
At1g47900.1 68414.m05334 expressed protein                             29   2.4  
At1g09910.1 68414.m01115 expressed protein                             29   2.4  
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ...    29   3.2  
At2g43020.1 68415.m05339 amine oxidase family protein similar to...    28   7.3  
At4g28490.1 68417.m04076 leucine-rich repeat transmembrane prote...    27   9.7  

>At5g58690.1 68418.m07353 phosphoinositide-specific phospholipase C
           family protein contains Pfam profile: PF00388
           phosphatidylinositol-specific phospholipase C
          Length = 578

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 246 YSRTIVIRAGTV-NMTRPAVVFETTDYLNHPLYDESIQQIVQPHDIGLIKFGRSLVFNDY 422
           YSR I I +G   N  + A+  +        L ++  ++  + +   +IKF +  +   Y
Sbjct: 313 YSRLITIPSGNAKNGLKEALTIDNGGVRRLSLREQKFKKATEMYGTEVIKFTQKNLLRIY 372

Query: 423 VQPIRLQSSYHKDYN 467
            +  R+ SS ++ YN
Sbjct: 373 PKATRVNSSNYRPYN 387


>At1g47900.1 68414.m05334 expressed protein
          Length = 1054

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 134  CPSSASHPDTILAPALTFSTKVRAGSADTTATPAIATR 21
            CPS +   DT  +P+   S   R+GS+ T ATP  A+R
Sbjct: 1006 CPSDSETSDTTTSPSRVGSRLSRSGSS-TNATPEKASR 1042


>At1g09910.1 68414.m01115 expressed protein
          Length = 675

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 195 SHHHPQRLGTHGCSLHCYSRTIVIRAG--TVNMTRPAVVFETTDY 323
           SH    R+ +HG  LH + R +V+  G   V +++P  +    +Y
Sbjct: 37  SHRKDHRMSSHGVHLHVHDRYVVMDNGILQVTLSKPGGIITGIEY 81


>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
           WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
           contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
          Length = 711

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 87  QGRRQDRIRMGSRRRTVPLPAVTAHGEP*GSSQRLWSHH--HPQRLGTHG 230
           QG +Q +   G  ++ +P+P +  H  P  S   L  HH   P ++  HG
Sbjct: 569 QGYQQQQQHQGHPQQMLPMPNMPHHQLPPSSHMPLHPHHLPRPMQMPPHG 618


>At2g43020.1 68415.m05339 amine oxidase family protein similar to
           polyamine oxidase SP:O64411 [Zea mays]; contains Pfam
           profile PF01593 amine oxidase, flavin-containing
          Length = 490

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 594 ITKISEQNALVTPRRKTQFIFSGAVPLVQFFPNRWQSDGNRRSCNPY 454
           I K+S++ A      + Q I   A+P VQ+  +RW SD N      Y
Sbjct: 362 IEKMSDEAAANFAVLQLQRILPDALPPVQYLVSRWGSDVNSMGSYSY 408


>At4g28490.1 68417.m04076 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 999

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
 Frame = +2

Query: 314 DRLFKPPTLRRIDTADCTTSRHRPHQVWTLPRF**LRPTDKATKXXXXXXXXXXXXSDCH 493
           + L K  +L R+  ++   S   PH  W LPR   L  +D +                  
Sbjct: 397 NNLGKCKSLTRVRLSNNKLSGQIPHGFWGLPRLSLLELSDNSFTGSIPKTIIGAKNLSNL 456

Query: 494 RLGKNWTNGTAPE---NMNWVF-LRGVTNAFCSEI 586
           R+ KN  +G+ P    ++N +  + G  N F  EI
Sbjct: 457 RISKNRFSGSIPNEIGSLNGIIEISGAENDFSGEI 491


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,447,101
Number of Sequences: 28952
Number of extensions: 325153
Number of successful extensions: 820
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)