Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0726
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    29   0.72 
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    28   1.3  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   2.2  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    27   2.2  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   3.8  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   5.0  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.7  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    26   6.7  

>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 309 VRCSHPCRNSPQRIRDG*RKVNIRYFTGLTATGRSSDNATVCRIVEFSME 160
           VR +   R S Q      + +N+ Y + L+ATG S +  TV  I E + E
Sbjct: 74  VRLNRLQRESEQFENSALKDINVEYQSNLSATGESVNTTTVSAINEDTRE 123


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 128 PTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLR*PS 265
           P+  T  +L      ++IL T+  SL   + VSP  Y +FT   PS
Sbjct: 89  PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPS 134


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 324  WHVLLVRCSHPCRNSPQRIRDG*RKVNIRYFTGLTATGRSSDNATVCRIV 175
            W +LLV  +  C NS   +R+G  ++  R F    +   ++  A+ C++V
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFNSQCSKLGTNAWASCCQLV 1073


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 638 FGKSNANDIYPVVLTSISSFTEWILQN 718
           FG S AN + PV L S  SFT +++++
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 620 AHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 513
           +H+  +  H S+Y R+R   PG N      QS   H
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 602 AFFQNALVGIVSFGKSNANDIYPVVLTSISSFTEWILQNVH*YFLLK 742
           AF+ N++VG++   K+    +    + +IS FT   L+++    LLK
Sbjct: 505 AFYINSMVGLLLLTKNYQERLMDSRIDAISKFTHSYLKSLSEIILLK 551


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 138 LPFNCYLFPWRILRSCIPSHYRWIFP 215
           LP + + F W    +C P H  WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +2

Query: 572 DYDNTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSISSFTEWILQN 718
           D  + +L       + +   +SF K    D YP  +  +  FT+ ++QN
Sbjct: 102 DLTDVELSDKVIKASYIEDTISFSKPKTVDNYPEYIQHLPGFTKKVVQN 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,393,536
Number of Sequences: 5004
Number of extensions: 76080
Number of successful extensions: 220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)