Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0726
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    32   0.51 
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.88 
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    31   0.88 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    31   1.2  
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U37430-5|AAB52674.2|  389|Caenorhabditis elegans Set (trithorax/...    29   3.6  
AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical ...    29   4.7  

>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 296 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 397
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 320 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 451
           C P+RPK P G   P  CR  PG      R G  NY +   ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +2

Query: 539 FCAGLVRAGGRDYDNTDLGAPAFFQN-----ALVGIVSFGKSNANDIYPVVLTSISSFTE 703
           FCAG +  GG D    D G P   +       L G++S+G   A    P + T ++ +  
Sbjct: 196 FCAGYLE-GGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLS 254

Query: 704 WI 709
           WI
Sbjct: 255 WI 256


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +2

Query: 296  CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 391
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +2

Query: 74  YSYPS*INGSNSALVLFSPTTTTFQLL 154
           YSYPS I   +S +V+ + TTTTF LL
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLL 101


>U37430-5|AAB52674.2|  389|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 12
           protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +2

Query: 335 PKHPAGCYYPTRCRNTPGYFC*SARMGNYRSRRQCI*RQPPQARTHCDQQRKLQGTVQGH 514
           PK   G    T C+   G  C +    N+ + R+C     P+  ++C+ QR  +    G 
Sbjct: 45  PKRKTGLLTVTSCKC--GTDCTTEECSNFANHREC-----PRGCSNCENQRFRKRQFCGV 97

Query: 515 DRVVTDNKFCAGL 553
           +  +TDN    GL
Sbjct: 98  ETFLTDNGIGHGL 110


>AF067944-4|AAC17670.2|  279|Caenorhabditis elegans Hypothetical
           protein K10C9.3 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +2

Query: 227 PVKYLMFTLR*PSRIL*GE---LRQGCEHRTSN---TCHPLRPKHPAGCYYPTRCRNTPG 388
           P  YLMFT   P+ +   +   + + CE  +     + H L P    G Y P  CR TP 
Sbjct: 22  PFDYLMFTTIYPTAVCRADDDSVPESCEIPSGTPQWSIHGLWPNFENGSY-PQNCRGTPR 80

Query: 389 YF 394
           +F
Sbjct: 81  HF 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,072,858
Number of Sequences: 27780
Number of extensions: 444780
Number of successful extensions: 1169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)