Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0726
(757 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 32 0.47
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 32 0.47
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative... 30 1.4
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative... 30 1.4
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative... 30 1.4
At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00... 29 4.4
At5g25170.1 68418.m02984 expressed protein 28 5.8
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi... 28 5.8
At4g11530.1 68417.m01850 protein kinase family protein contains ... 28 7.7
At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like... 28 7.7
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.47
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -3
Query: 392 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 288
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 31.9 bits (69), Expect = 0.47
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -3
Query: 392 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 288
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 148 LKGSGSW*EQYQRTVGTIDSRWV 80
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 148 LKGSGSW*EQYQRTVGTIDSRWV 80
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 148 LKGSGSW*EQYQRTVGTIDSRWV 80
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00646
F-box domain
Length = 472
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 199 IAGSSRRSEPGEISYVHFALTIPNSLRRITT 291
++ S RS G+ISY HF T+P S+ +TT
Sbjct: 127 LSNPSWRSN-GDISYRHFMYTLPKSVYSLTT 156
>At5g25170.1 68418.m02984 expressed protein
Length = 218
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 535 QILRRFGPGWWPRLRQY*LGCPCLLP 612
Q+ RR P W RL ++ L C C+LP
Sbjct: 127 QLTRRSIPSWVNRLARFGLFCNCVLP 152
>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 656
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 581 NTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSIS 691
N +G AF NA + FG +N IYP +T +S
Sbjct: 479 NAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVS 515
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +1
Query: 85 ILNQWFQQCAGIVLTNYHYLSTATCFHGEF-----YDPAYRRIIA 204
+LN F L + Y+ST TCF+G F YD RRI++
Sbjct: 2 MLNTLFLPIFLFFLITFDYVSTQTCFNGYFKPNGTYDLNRRRILS 46
>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
thaliana]
Length = 359
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = -3
Query: 476 HNEF-ELVEVAVRYTAAL----NGSSPSEQINKNTLGYYDTLLDNSTLLDVWA--EVDGM 318
HN F L EV+ +A L S + Q+N G+ + D D+W DG
Sbjct: 84 HNSFARLGEVSRTGSAILAPTNQQDSITSQLNNGVRGFMLDMYDFQN--DIWLCHSFDGT 141
Query: 317 CYSYDAHILVVILLREF 267
C+++ A + +LREF
Sbjct: 142 CFNFTAFQPAINILREF 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,984,973
Number of Sequences: 28952
Number of extensions: 409965
Number of successful extensions: 1066
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -