Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0723
         (431 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CH33 Cluster: Chromosome undetermined scaffold_18, wh...    36   0.36 
UniRef50_A0E7P8 Cluster: Chromosome undetermined scaffold_81, wh...    31   7.8  

>UniRef50_A0CH33 Cluster: Chromosome undetermined scaffold_18, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_18,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 257

 Score = 35.9 bits (79), Expect = 0.36
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
 Frame = -3

Query: 408 MSPNRVCSYEKRYHKTLIG*FSNLGPKASHLILFS*P*RYRNYKSQ*IRCHATGTWS--- 238
           M   +   +  ++ K LI  + +LGP+ +  +LFS        ++Q I+C    +     
Sbjct: 1   MDRKQTIQFIHKFLKILIQSYLDLGPEVARYLLFS-------DQNQQIQCQLLNSLELHH 53

Query: 237 -YNY---IFVNTVKLGVIHKK--LPQISFVSLVRNSNSNLFAIFPMRVEIRQ-FYLISIY 79
            YN+   + V TV + + +KK  L Q  F    RNSNS       ++ +  Q  Y + I 
Sbjct: 54  FYNFLSLLLVYTVPIFISNKKCCLLQTIFQQGYRNSNSRCTLNLEIQSKGNQCLYSLKIL 113

Query: 78  YS-NKGKLTGY*NIIKNKRSTIFK 10
           +S +K K+  +   I++KRS++F+
Sbjct: 114 FSGSKVKMLIFTGFIQSKRSSLFR 137


>UniRef50_A0E7P8 Cluster: Chromosome undetermined scaffold_81, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_81,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 633

 Score = 31.5 bits (68), Expect = 7.8
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -3

Query: 234 NYIFVNTVKLGVIHKKLPQISFVSLVRNSNSNL-FAIFPMRVEIRQFYLISIYY 76
           NY+FV  ++    + KL     VS+V+N NSN   +  P+ + I  F +++IYY
Sbjct: 241 NYLFVIKLQQANKNSKLTLPEVVSIVQNENSNFTISFLPLILGI-FFVILAIYY 293


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 385,581,436
Number of Sequences: 1657284
Number of extensions: 6935619
Number of successful extensions: 12916
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12914
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)