Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0723
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)             27   6.6  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_166| Best HMM Match : Myb_DNA-binding (HMM E-Value=6.7)
          Length = 380

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 257 MQQARGPITIYS*TLLN*ELYIKNYPKSHSYHW 159
           M Q RG   +     LN +  I  YPK H YHW
Sbjct: 114 MTQGRGSCILQ----LNSQHRIPRYPKHHLYHW 142


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 98   NCRISTRIGKIANKLEFEFRTSDTNEI 178
            NC +S  +GK+ N L  +F+ S   E+
Sbjct: 1832 NCELSRNVGKLDNNLFSKFQQSKEEEV 1858


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,845,912
Number of Sequences: 59808
Number of extensions: 216925
Number of successful extensions: 432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)