Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0722
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    29   0.98 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   5.2  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    26   6.9  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   6.9  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   6.9  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    25   9.2  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    25   9.2  

>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = +3

Query: 273 RPWVYCAGLRHGTAEDFNFFWNRYLQEDLSSEKVVMLNVAGCTTDQASLNRFLDAIVS 446
           R W Y  GL  G   D N  +N YLQ      K   LNV     +  +  ++LD+I S
Sbjct: 307 RVWTYETGLLAGEELDENLPYNDYLQYYGPDYK---LNVLSNNMENHNTRQYLDSITS 361


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 567 LVAWSTLFLSHWKALRVFI 511
           L  W  LFL+HWK   V I
Sbjct: 239 LYMWGVLFLNHWKLTVVII 257


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 685 CGSQGVLVGRQPVRNLIYLFLV 620
           C S   LVG QP++NL +L +V
Sbjct: 61  CFSPTSLVGAQPLKNLTHLIIV 82


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 669  FWLAVNQFETSFICSSLRRRPIIVFKIVETLPRVLVAWST 550
            F  ++N+ ++   C    R PI + K+++  P +L  WST
Sbjct: 2109 FITSLNKNQSRIFCF---REPIRISKLLQNFPALLSKWST 2145


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +2

Query: 530 FQWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSNWLTANQNTLGATYSTA 697
           F+ LR     A    G  ST+  T    L +E+    VS +LT +       YSTA
Sbjct: 318 FEGLRFQGSSAVLKEGLNSTVKKTFFDNLNSEKVCPSVSPFLTPDNIASSILYSTA 373


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 661 QPKHPGSHIQHGATSYRDHAVEPRLVTAENFRIHNY 768
           Q +   S+++H +TS  + AV    + + ++ IH Y
Sbjct: 145 QDRETKSNVEHKSTSQANDAVNKSFLPSVSYLIHQY 180


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 679 SHIQHGATSYRDHAVEPRLVTAEN 750
           SHIQ G   Y+ HA+   + T E+
Sbjct: 451 SHIQLGVAQYKTHAIAESMKTFED 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,327,294
Number of Sequences: 5004
Number of extensions: 71521
Number of successful extensions: 210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)