Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0722
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0452 + 20931484-20933872,20933950-20934074 30 1.8
07_03_0861 + 22072041-22072789,22074065-22074164 29 3.1
03_05_0376 - 23598026-23598136,23598395-23598484,23598870-235989... 29 5.4
01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357... 29 5.4
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 28 7.2
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 28 7.2
05_03_0297 - 11911699-11911772,11911987-11912072,11912245-119123... 28 7.2
02_05_0100 - 25821606-25822349 28 9.5
02_02_0114 - 6917071-6917239,6917512-6917549 28 9.5
>06_03_0452 + 20931484-20933872,20933950-20934074
Length = 837
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +2
Query: 467 TRLQCCSNLRYYIQEINTLRAFQWLRNNVDQATRTLGSVSTILNTIIGRLLNE-EQINEV 643
T L CSNLRY NTL L +N+D+ + L ++ N++ G + + Q+ +
Sbjct: 121 TALYNCSNLRYLDLSYNTL--VNSLPSNIDRLSPRLVYLNLASNSLSGNIPSSIGQLKVL 178
Query: 644 SN-WLTANQ 667
+N +L ANQ
Sbjct: 179 TNLYLDANQ 187
>07_03_0861 + 22072041-22072789,22074065-22074164
Length = 282
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -3
Query: 298 SPAQYTHGRMLAGIKYRCSTSEGLGSKVIAFFVSHVTKEFHYVHSLKISHVGAILWL 128
+PA M+ +R SKV+ F S +T+E+H S+ S + A WL
Sbjct: 41 APAAKEEEEMVGTTSFRVVARANYESKVVIFVFSSLTEEWHSSRSVSWSLLTADPWL 97
>03_05_0376 -
23598026-23598136,23598395-23598484,23598870-23598935,
23599743-23599811,23599890-23599998,23600135-23600232,
23600339-23600420,23601163-23601242,23601346-23601516,
23601671-23601735,23601842-23601986,23602072-23602245,
23602498-23602572,23602831-23602959,23603295-23603432,
23603509-23603610,23604008-23604112,23604282-23604399,
23605752-23605909,23606159-23606261,23606515-23606582,
23606940-23607016,23608635-23608806
Length = 834
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 533 QWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSNWLTANQNTL 676
QW N+D R L S+ T+ I+ L I+ V L A +NT+
Sbjct: 97 QWTMRNIDDRNRLLFSILTMCKEILSYLPKVVGIDFVELALWAKENTV 144
>01_07_0242 +
42234217-42234320,42234708-42235029,42235377-42235778,
42235921-42236265,42236785-42236854,42237098-42237173,
42237309-42237459
Length = 489
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 14 SGFNFLIRRLAHDSTNAALLQKLILELSPAVVAKLGYLEPENGSYMTDL 160
SGF+ +I +HD+ + + ++L L+ LG+L N +DL
Sbjct: 441 SGFDVIIMSSSHDTHTSLIDHNIVLNLAAVASFLLGFLLKNNDFAASDL 489
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +2
Query: 71 LQKLILELSPAVVAKLGYLEPENGSYMTDLQRMYVMEFLCNVGHEECNNFGTQAF 235
+++L++ L + LG+ E S++ + R ++ L +GH+E N G + F
Sbjct: 569 IKQLLINLLLSAAKTLGWDPKEGESHLDVMLRSLLLIALVKLGHDETINEGVRRF 623
>08_01_0441 +
3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 217 LWNPGLPKWSTGTLSRLTCARGCTALDYVTARRKTSTSSGIATFRK 354
L P W L+R+T A T L++ A RKT SG+ + +K
Sbjct: 327 LHGPASEWWDHFRLNRIT-AEPITWLEFTAAFRKTHIPSGVVSLKK 371
>05_03_0297 -
11911699-11911772,11911987-11912072,11912245-11912332,
11912592-11912719,11913540-11913961,11931803-11932423
Length = 472
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 217 LWNPGLPKWSTGTLSRLTCARGCTALDYVTARRKTSTSSGIATFRK 354
L P W L+R T A T L++ A RKT SG+ + +K
Sbjct: 109 LHGPASEWWDHFRLNRTT-AEPITCLEFTAAFRKTHIPSGVVSLKK 153
>02_05_0100 - 25821606-25822349
Length = 247
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 658 GQPKHPGSHIQHGATSYRDHAVEP 729
G P H G H QHG + R AV P
Sbjct: 111 GHPWHEGPHPQHGFQASRSSAVGP 134
>02_02_0114 - 6917071-6917239,6917512-6917549
Length = 68
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 222 PKLLHSSCPTLQRNSITYIL*RS 154
P+ +H SC LQR ++TYI RS
Sbjct: 7 PETVHQSCYDLQRATMTYIYGRS 29
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,634,141
Number of Sequences: 37544
Number of extensions: 514445
Number of successful extensions: 1324
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -