Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0722
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                39   0.004
SB_39465| Best HMM Match : PDH (HMM E-Value=1.5)                       36   0.048
SB_34160| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 31   0.79 
SB_35463| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_53761| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  

>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 1240

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 22/69 (31%), Positives = 34/69 (49%)
 Frame = +2

Query: 5    AAISGFNFLIRRLAHDSTNAALLQKLILELSPAVVAKLGYLEPENGSYMTDLQRMYVMEF 184
            AA+S   FL  RL  +  +  L +K  L+    +V KLG+   + GS++    R YV++ 
Sbjct: 932  AALSNMGFLESRLCENEEHMTLYKKYALQQLIPIVRKLGW--DDKGSHLQKYLRSYVLKL 989

Query: 185  LCNVGHEEC 211
                G  EC
Sbjct: 990  CARYGDVEC 998


>SB_39465| Best HMM Match : PDH (HMM E-Value=1.5)
          Length = 369

 Score = 35.5 bits (78), Expect = 0.048
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +3

Query: 258 IPANMRPWVYCAGLRHGTAEDFNFFWNRYLQEDLSSEKVVMLNVAGCTTDQASLNRFLDA 437
           +  ++R  VY   +++G  ++++F W RY      +EK  ++     T D   L R LD 
Sbjct: 177 VSPHLRGMVYHTAVKYGGEKEWDFLWGRYQNSIDPTEKSRIMYALTGTRDVWLLGRLLDY 236

Query: 438 IVSGNDDIRPQDYNAAL 488
            +     IR QD  + L
Sbjct: 237 TLD-ESKIRTQDMTSVL 252



 Score = 33.1 bits (72), Expect = 0.26
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +2

Query: 521 LRAFQWLRNNVDQATRTLGSVSTILNTIIG---RLLNEE-QINEVSNWLTANQNTLGATY 688
           L A+   R N D+  R  G  +  L  +I    R  N E  +NE+  ++  +   LG+  
Sbjct: 263 LLAWDHFRMNFDKIIRRTGKDAMELGYMISGTTRSFNHEFHLNELKQFIKDHDEILGSLR 322

Query: 689 STALRAIETTRSNLVWSQQRISEFT 763
           ++  +AIET +SN+ W +    E T
Sbjct: 323 ASK-KAIETIQSNINWMKAHGKEVT 346


>SB_34160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +3

Query: 258 IPANMRPWVYCAGLRHGTAEDFNFFWNRYLQEDLSSEKVVMLNVAGCTTDQASLNRFLDA 437
           IPA++R  VY   L+HG     +       + DL  E+V ++   G  T    +++ LD 
Sbjct: 284 IPADLRSAVYSIVLKHGDEAMLSAVQKLLRETDLHEERVRLMRCMGNVTQPELISKVLDF 343

Query: 438 IVS 446
            +S
Sbjct: 344 AIS 346


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = +3

Query: 258 IPANMRPWVYCAGLRHGTAEDFNFFWNRYLQEDLSSEKVVMLNVAGCTTDQASLNRFLD 434
           IP N+R  VY  G+ +G  +++NF +++  +   +S++  M+     T     L R+L+
Sbjct: 756 IPPNLRRLVYSQGVANGGEKEWNFLFDQLSKNPSASDQRRMIVGLAATKQSWLLARYLN 814


>SB_35463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 363 SEKVVMLNVAGCTTDQASLNRFLDAIVSGNDDIRPQDYNAALTSAITSKR 512
           SEK + +N    T D   L +FL   + GN+D+  Q ++A       SK+
Sbjct: 262 SEKELQVNGHVVTADATFLPQFLSRDIVGNNDVEAQRHDARTAIKNGSKK 311


>SB_53761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = +3

Query: 261 PANMRPWVYCAGLRHGTAEDFNFFWNRYLQEDLSSEKVVMLNVAGCTTDQASLNRFLDAI 440
           P N +     +G+R  T  D  F   R     L+++  +  ++ G  + +ASL+    +I
Sbjct: 58  PFNKKKCYVVSGIRKSTNNDLYFSNTREAYNFLNTDTKISASLEGKYSMKASLDAVTSSI 117

Query: 441 VSGNDDIR 464
            S +++I+
Sbjct: 118 SSSSEEIK 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,408,246
Number of Sequences: 59808
Number of extensions: 573714
Number of successful extensions: 1330
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)