Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0722
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19910.1 68416.m02521 zinc finger (C3HC4-type RING finger) fa...    31   0.64 
At1g66160.2 68414.m07510 U-box domain-containing protein similar...    29   2.6  
At1g66160.1 68414.m07509 U-box domain-containing protein similar...    29   2.6  
At5g57610.1 68418.m07197 protein kinase family protein similar t...    29   4.5  
At1g47560.1 68414.m05279 expressed protein                             29   4.5  
At1g47550.1 68414.m05278 expressed protein                             29   4.5  
At2g26680.1 68415.m03200 expressed protein similar to NLPE1 (GI:...    28   6.0  
At1g31950.1 68414.m03927 terpene synthase/cyclase family protein...    28   7.9  

>At3g19910.1 68416.m02521 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 340

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 443 DNRIQESIQTGLVSSTASNVEHYHLLTGQIFLKVAIPEE 327
           D R+ E+ QTG+VS T S  E      G+  + VA+P E
Sbjct: 28  DGRLPENRQTGVVSDTGSGSERGEQGVGESAVAVAVPVE 66


>At1g66160.2 68414.m07510 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 415

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 2   LAAISGFNFLIRRLAHDSTNAALLQKLILELSPAVVAKLGYLEPENGSYMTDLQR 166
           L   S FN L+  L +   NAA L K +LEL+   V  L  +     ++M  + R
Sbjct: 194 LTTTSSFNRLVELLRNGDQNAAFLIKELLELNVTHVHALTKINGVQEAFMKSINR 248


>At1g66160.1 68414.m07509 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 431

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 2   LAAISGFNFLIRRLAHDSTNAALLQKLILELSPAVVAKLGYLEPENGSYMTDLQR 166
           L   S FN L+  L +   NAA L K +LEL+   V  L  +     ++M  + R
Sbjct: 210 LTTTSSFNRLVELLRNGDQNAAFLIKELLELNVTHVHALTKINGVQEAFMKSINR 264


>At5g57610.1 68418.m07197 protein kinase family protein similar to
           protein kinase [Glycine max] GI:170047, MAP3K delta-1
           protein kinase [Arabidopsis thaliana] GI:2253010;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1054

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 613 SPQRGTDK*GFELVDGQPKHPGSHIQHGATSYRDHAVEPRLVTAENFRIHN 765
           SPQR +   G   + GQP +P  H+Q      R   ++P  V +EN  +HN
Sbjct: 557 SPQRISGFDGMSSL-GQPSYPNPHLQD-----RAFPLDPNWVPSENPTVHN 601


>At1g47560.1 68414.m05279 expressed protein
          Length = 887

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 533 QWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSNWLTANQNT 673
           QW   N D   R L  +  I   ++GRL     I+ V   L A  NT
Sbjct: 123 QWTMRNTDDRNRLLVCILNICKDVLGRLPKVVGIDIVEMALWAKDNT 169


>At1g47550.1 68414.m05278 expressed protein
          Length = 887

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 533 QWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSNWLTANQNT 673
           QW   N D   R L  +  I   ++GRL     I+ V   L A  NT
Sbjct: 123 QWTMRNTDDRNRLLVCILNICKDVLGRLPKVVGIDIVEMALWAKDNT 169


>At2g26680.1 68415.m03200 expressed protein similar to NLPE1
           (GI:13022100) [Rhizobium etli];
          Length = 319

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 77  KLILELSPAVVAKLGYLEPENGSYMTDLQRMYVMEFLCNVGHEECNNFGTQA 232
           K +L   PA    L Y E E     ++     + +FL +VG+ +C+  GT A
Sbjct: 263 KKLLSGKPAEAPYLIYEEDERLLTASNSSSKEIRDFLKSVGYSKCSQHGTDA 314


>At1g31950.1 68414.m03927 terpene synthase/cyclase family protein
           similar to sesquiterpene synthases
           [GI:11934937][Lycopersicon hirsutum],
           [GI:11934933][Lycopersicon esculentum]; contains Pfam
           profile: PF01397: Terpene synthase family
          Length = 606

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +2

Query: 503 IQEINTLRAFQWLRNNVDQATRTLGSVSTILNTIIGRLLNEEQINEVSNWLTANQNTLGA 682
           +++IN   AF+WL +N     + L ++  + N  +G    E    EV+N L       G 
Sbjct: 471 MEDINEKEAFEWLNSN-PLIIKHLTAMFRLAND-VGTYETEINRGEVANGLNCYMKQYGV 528

Query: 683 TYSTALRAI 709
           T   A R +
Sbjct: 529 TKEEASREL 537


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,718,377
Number of Sequences: 28952
Number of extensions: 390015
Number of successful extensions: 1073
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)