Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0721
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    28   1.5  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.7  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   4.7  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    26   6.2  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   8.2  

>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 598 LYTRSYIRMIMRSYCDSVLHFVNGFHVKIS 509
           LYT   I    +   D++ H  NGFHV +S
Sbjct: 303 LYTSRNIEKTYKHQADAINHLWNGFHVIVS 332


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 683 IIFFSFCTDQSQNLCYVIN*LNLISNLETLYSIVYPDDN 567
           I+ F F    SQN  + +N  NL+ +L      V PDD+
Sbjct: 72  ILTFPFLDPDSQNQLWNVNFRNLLKSLSKSNVSVLPDDS 110


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 296 SEHFHIYLPFKPSLTSTNNSRPKLAKSVQQFSSFSETNEQKF 171
           S +F+ Y P  PS+T   N  P  A     +SSF +T+ + +
Sbjct: 284 SSNFNPYTP-APSITVPPNYIPNTAMMGPSYSSFGDTDPRTY 324


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 402 ISRLRHYEVCRVSNNIQNSSYFLHDRGPFRDHVKGHDIFT*NPF 533
           I +  +  V   S+  +N + F H    F+D +  +D  T NPF
Sbjct: 34  IPKSEYLNVAFKSDKSRNQALFSHAIKEFQDSISPNDATTQNPF 77


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
 Frame = -1

Query: 593 YSIVYP---DDNXXXXXXXXXXRKRVS---CKNIVPFHVVTKRSSVVEKIRTILYIIADP 432
           + +VYP   DD+          RK V    CK++V    +T+R + +    T+L+ +  P
Sbjct: 261 WELVYPKLLDDDRFYVLDSGERRKEVFEEYCKSVVSTKKITRRKNTLSDFWTLLHSL--P 318

Query: 431 ADFVVPQSRNKRPK 390
           +  + PQ + K  K
Sbjct: 319 STLLWPQFKRKYRK 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,372
Number of Sequences: 5004
Number of extensions: 52032
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)