Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0721
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0060 - 19695338-19695477,19695641-19695734,19695818-196959...    29   2.8  
06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540...    29   2.8  

>11_06_0060 -
           19695338-19695477,19695641-19695734,19695818-19695973,
           19696109-19696168,19696384-19696602,19696607-19697036,
           19698428-19698747
          Length = 472

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -1

Query: 494 VTKRSSVVEKIRTILYIIADPADFV---VPQSRNKRPKLLYKINLKQTKAIRPTEDASKK 324
           V +R+ VVE I++ L I ADPA F+   +PQ      +  ++   K    +R T D   +
Sbjct: 318 VFQRTKVVESIQSYLDISADPATFIQGAIPQLIENTKEEFFE---KTVDVLRQTADICWE 374

Query: 323 KTK 315
           K K
Sbjct: 375 KLK 377


>06_01_0733 +
           5405889-5405922,5405923-5405975,5406430-5406543,
           5407464-5407523,5408139-5408217,5410661-5410728,
           5411198-5411302,5411887-5411994,5412087-5412279,
           5412818-5412897,5413309-5413536,5414112-5414252,
           5414341-5414466,5414561-5414611,5414879-5414956,
           5415814-5415960,5416685-5417179
          Length = 719

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 505 GTIFLHETRLRNAKRNHSKNALSSGYTIEYKVSRFEIKFN 624
           G + LH++ L+       KNA++    +E KV   E+K N
Sbjct: 395 GEVALHQSVLKRLSEEAGKNAMNEQIEMEMKVVNDEVKLN 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,177,995
Number of Sequences: 37544
Number of extensions: 263649
Number of successful extensions: 447
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)