Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0721
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)                33   0.31 
SB_17519| Best HMM Match : HLH (HMM E-Value=6e-08)                     30   1.6  
SB_36316| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.5e-11)         30   2.2  
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)                 29   3.8  
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
          Length = 1633

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 24/86 (27%), Positives = 40/86 (46%)
 Frame = -1

Query: 446  IIADPADFVVPQSRNKRPKLLYKINLKQTKAIRPTEDASKKKTKL*FLFNSEHFHIYLPF 267
            +   P+D +  +SR KRPK+  +I+    K ++ +   + KK+       S H   +  F
Sbjct: 1521 VFQSPSDIL--RSRKKRPKMATRISENSLKLLQESPILANKKSVF-RPSPSSHTKNWADF 1577

Query: 266  KPSLTSTNNSRPKLAKSVQQFSSFSE 189
             PS   T  +R    K  + FSS S+
Sbjct: 1578 SPSDNITKKARLSRRKRSEAFSSESD 1603


>SB_17519| Best HMM Match : HLH (HMM E-Value=6e-08)
          Length = 125

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -1

Query: 518 KNIVPFHVVTKRSSVVEKIRTILYIIADPADFVVPQSRNKRPKLLYKINLKQTKAIRPTE 339
           KN+VP   V +R S VE ++ ++  I D    +  Q+ N+R +   ++N      I   E
Sbjct: 51  KNMVPNVPVGRRISKVEILQYVIDYILDLQTALENQTANRRRRRSNRVNRSPLSTISLNE 110

Query: 338 DASK 327
           D  K
Sbjct: 111 DIEK 114


>SB_36316| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.5e-11)
          Length = 632

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 530 VYEMQNGITVRTHYHPDIRSSIKFQG 607
           V+E+  GI +R HY  D   S KF G
Sbjct: 544 VFELNTGIPLRRHYDNDFAGSYKFYG 569


>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
          Length = 1127

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 263  PSLTSTNNSRPKLAKSVQQFSSFSETNE 180
            PSLT++N S P L  S +  SS + +NE
Sbjct: 989  PSLTTSNESIPSLTTSNESISSLTTSNE 1016



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 263  PSLTSTNNSRPKLAKSVQQFSSFSETNE 180
            PSLT++N S P L  S +  SS + +NE
Sbjct: 939  PSLTTSNKSIPPLTTSNESISSLTTSNE 966


>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = -1

Query: 389 LLYKINLKQTKA-IRPTEDASKKKTKL*FLF-NSEHFHIYLPFKPSLTSTNNSRPKLAKS 216
           L Y+  +K T+  + P   +SKK+TK+  +F +     IY       TS   +  +  +S
Sbjct: 180 LKYEPKVKSTRVFVNPASRSSKKRTKILLIFIHVTSISIYKNNSLVSTSVLLAESRQFRS 239

Query: 215 VQQFSSFSETNEQK 174
           +QQ S  ++  + K
Sbjct: 240 LQQKSELNQRQQTK 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,718,233
Number of Sequences: 59808
Number of extensions: 336837
Number of successful extensions: 615
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)