Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0720
         (613 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2K294 Cluster: Hypothetical conserved protein; n=1; Rh...    33   5.3  
UniRef50_A1VZL0 Cluster: Thiol:disulfide interchange protein Dsb...    32   9.3  

>UniRef50_Q2K294 Cluster: Hypothetical conserved protein; n=1;
           Rhizobium etli CFN 42|Rep: Hypothetical conserved
           protein - Rhizobium etli (strain CFN 42 / ATCC 51251)
          Length = 468

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 348 YSHCLRTSLNKGTNNHLKLNRTNILVCIHL*KVLTFHNTLSISDRRI*DIQCTQIN-SIT 172
           ++HCLR  L  G N+H+ L   NIL   +L  V+ F  T   SD      +  QI+ S+ 
Sbjct: 309 FTHCLRRVLRGGHNHHVDLRNPNILGKDYL--VIDFDGTFYPSDEARMVTRVGQIDLSVG 366

Query: 171 NWRSGIE 151
           N   GI+
Sbjct: 367 NLWDGID 373


>UniRef50_A1VZL0 Cluster: Thiol:disulfide interchange protein DsbA,
           putative; n=10; Campylobacter|Rep: Thiol:disulfide
           interchange protein DsbA, putative - Campylobacter
           jejuni subsp. jejuni serotype O:23/36 (strain 81-176)
          Length = 223

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 22  YLNLNLIVPNKQNHVDE-INYSCIH*KNHLKHRN*AVLEYSY-NLFYSTSPV 171
           ++ LN  +PN +N V E  +Y CIH  NH K      L  ++ NL +   PV
Sbjct: 35  FITLNPSLPNSENSVIEAFSYKCIHCYNHHKFGTLEKLREAFPNLHFKLYPV 86


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 461,760,584
Number of Sequences: 1657284
Number of extensions: 7843207
Number of successful extensions: 14973
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14960
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)