Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0720
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.77 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   9.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   9.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.5  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 247 NVSQYSINI*STNLRHSMYTN*FNNELEK--WNRINYRNI 134
           N + Y  N  + N  ++ Y N +NN  +K  +N IN   I
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQI 364


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/37 (21%), Positives = 18/37 (48%)
 Frame = -2

Query: 390 TNTKRQVVTFILGNYSHCLRTSLNKGTNNHLKLNRTN 280
           T+ + ++++ +  NY +    + N   NN+   N  N
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNN 111


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/37 (21%), Positives = 18/37 (48%)
 Frame = -2

Query: 390 TNTKRQVVTFILGNYSHCLRTSLNKGTNNHLKLNRTN 280
           T+ + ++++ +  NY +    + N   NN+   N  N
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNN 111


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 187 N*FNNELEKWNRINYRNIRE 128
           N +NN    +N  NY N ++
Sbjct: 332 NNYNNNYNNYNNNNYNNYKK 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,720
Number of Sequences: 438
Number of extensions: 2695
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)