Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0720
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49700.1 68416.m05434 1-aminocyclopropane-1-carboxylate synth...    27   9.8  
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar...    27   9.8  

>At3g49700.1 68416.m05434 1-aminocyclopropane-1-carboxylate
           synthase, putative / ACC synthase, putative similar to
           ACC synthases from Arabidopsis thaliana [GI:940370],
           Lycopersicon esculentum [GI:508609], Cucumis sativus
           [GI:3641649]
          Length = 470

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 211 NLRHSMYTN*FNNELEKWNRINY 143
           ++RH + TN F  ELE W +I Y
Sbjct: 363 DMRHLLDTNTFEAELELWKKIVY 385


>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
           RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 845

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 217 STNLRHSMYTN*FNNELEKWNRINYRNIREQP 122
           STNL HS  +    +E   WNRI  RN+   P
Sbjct: 49  STNLFHSGLSKRITSERSLWNRIFSRNMGGGP 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,999,687
Number of Sequences: 28952
Number of extensions: 167174
Number of successful extensions: 234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)