Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0719
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.0  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   6.0  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.0  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 411 QTRRNPEWRMRTT 373
           QTRRNP +R RT+
Sbjct: 226 QTRRNPYYRPRTS 238


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 320 CSNTSSGTSYSHCRC 276
           C+  ++ T +SHC+C
Sbjct: 140 CTPNATNTVWSHCQC 154


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 320 CSNTSSGTSYSHCRC 276
           C+  ++ T +SHC+C
Sbjct: 140 CTPNATNTVWSHCQC 154


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 380 EQLLLEGGVPGIAD 339
           EQ+L EGG P + D
Sbjct: 837 EQILAEGGCPNLYD 850


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 687 VYVQHFIADFCLYYIIK*IAFLL 619
           ++  H +   C+YY +  + FLL
Sbjct: 122 IFTVHLLFLLCIYYFVVPLFFLL 144


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -2

Query: 320 CSNTSSGTSYSHCRCTSTNEFGAESMSLVTDVVWKDRTAESCV 192
           C + SSG  Y+   C     F   S+      V K +   SC+
Sbjct: 41  CGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCI 83


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -2

Query: 320 CSNTSSGTSYSHCRCTSTNEFGAESMSLVTDVVWKDRTAESCV 192
           C + SSG  Y+   C     F   S+      V K +   SC+
Sbjct: 41  CGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCI 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,624
Number of Sequences: 336
Number of extensions: 3919
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)