Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0719
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0029 - 27163121-27163818,27163992-27164067,27164184-271658... 32 0.56
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 32 0.56
03_06_0422 + 33818887-33819996 31 0.98
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 30 1.7
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 30 1.7
12_01_0686 - 5855216-5858263 30 2.3
06_01_0210 - 1596578-1596868,1598550-1598828,1600503-1600511,160... 29 3.0
07_03_1191 + 24690936-24691029,24691184-24691377 29 3.9
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539... 28 6.9
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 28 6.9
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 28 9.1
01_01_0176 + 1507592-1507678,1507803-1507931,1508076-1508252,150... 28 9.1
>05_07_0029 -
27163121-27163818,27163992-27164067,27164184-27165896,
27166285-27166364,27166516-27166684
Length = 911
Score = 31.9 bits (69), Expect = 0.56
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 350 GIADDEGAEDCSNTSSGTSYSHCRCTSTNEFGAESMSLV 234
G D +E+C+ GT+ + RC+ TN FG +S +L+
Sbjct: 684 GFRDRRRSENCTMQQDGTNKRNSRCSETN-FGQDSSNLI 721
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 78 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 206
VC T++P +QVC+ +C G CS+ + D C LC
Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92
>03_06_0422 + 33818887-33819996
Length = 369
Score = 31.1 bits (67), Expect = 0.98
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -2
Query: 464 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 294
E ++ER + E+T SL + N E ++L+G D+ +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206
>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
Length = 106
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 78 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 179
+CRQ + C CH++ LC G + S P T G
Sbjct: 38 ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 30.3 bits (65), Expect = 1.7
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Frame = -2
Query: 509 LCRMAVVVFLK-VNSLESEEQQERHHKTEQTHS---LRQGETQNGV*EQLLLEGGVPGIA 342
L +A ++ LK + S ++ ++ EQT + Q T NG E L GG ++
Sbjct: 328 LAVLACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVS 387
Query: 341 DDEGAEDCSNTSSG--TSYSHCRCTSTNEFGAESMSLVTDVVWKDRTAESCVGT-AGTIC 171
+ GAE S+ + T+ + T T+ GA+ + D + K ++ + T T+
Sbjct: 388 SNGGAESVSSNARAQPTTTNGGEETKTSNAGAQKNTRNADFMDKAQSLVVLLSTLVATVA 447
Query: 170 VWVGTAASG 144
G G
Sbjct: 448 YQAGLVPPG 456
>12_01_0686 - 5855216-5858263
Length = 1015
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 137 WCDHLQQYPPIHRWYLLSLHSSLQCGP-SRPHRSLRTLTLRQIHWCWCSDS 286
WCDH+ +Y P + +LSL GP ++R+LT ++H+ S S
Sbjct: 233 WCDHIAKYTP--KLQVLSLPYCSLSGPVCASFAAMRSLTTIELHYNLLSGS 281
>06_01_0210 -
1596578-1596868,1598550-1598828,1600503-1600511,
1600713-1600781
Length = 215
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 206 QCGPS-RPHRSLRTLTLRQIHWCWCSDSG 289
Q GP RPH S + +R IH C C+ G
Sbjct: 143 QLGPHHRPHTSAQNRIIRTIHHCHCNSPG 171
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 78 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 188
VC++T+ C+Q CH + L G T S + D CC
Sbjct: 38 VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75
>11_01_0662 -
5389746-5390548,5390727-5391368,5391624-5391659,
5392314-5392377
Length = 514
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 473 NSLESEEQQERHHKTEQTHSLRQ 405
NS+ E QE+ H E+TH LRQ
Sbjct: 62 NSIFYSESQEQKHVKEETHRLRQ 84
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 232 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 86
P+W G ++ AV G + P+ +G+ ++ P Q+ + W+ VW
Sbjct: 8 PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -1
Query: 249 VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 85
+N+++ RCG HC L + L + H + E G GC DQSG
Sbjct: 22 LNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72
>01_01_0176 +
1507592-1507678,1507803-1507931,1508076-1508252,
1508630-1508770,1509045-1509233,1509311-1509382,
1509483-1509537,1509987-1510015,1510182-1510396,
1510987-1511151,1511262-1511646
Length = 547
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 397 VSPCLRLWVCSVL*WRSCCSSLSKLFTFKNTTTAILHRGFSVY-YLEWTAMESNVWKPH 570
++P L L CS L S+S++ T++ + + G V+ YL++ E+ +W PH
Sbjct: 297 LAPDLLLIYCSFLSGAPLEISISRMLTYQ--LVWVKNSGKIVFGYLKFQKFEAGIWNPH 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,268,376
Number of Sequences: 37544
Number of extensions: 436922
Number of successful extensions: 1378
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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