Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0719
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    44   1e-04
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    29   2.5  
At5g49470.2 68418.m06121 protein kinase family protein contains ...    29   4.4  
At5g49470.1 68418.m06122 protein kinase family protein contains ...    29   4.4  
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ...    29   4.4  
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   7.6  
At3g06620.1 68416.m00769 protein kinase family protein contains ...    28   7.6  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +3

Query: 324 FGSLIIGYARNPSLKQQLFSYAILGFALSE 413
           F SLI   ARNPSL +Q F YAILGFAL+E
Sbjct: 39  FSSLIHSVARNPSLAKQSFGYAILGFALTE 68


>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 486 HYYCHPT*RFQCILSGVDSHGIECLETSP 572
           H +C P    Q +L+GVD+H ++C +  P
Sbjct: 262 HIFCFPC-ILQYLLTGVDNHKVDCFKRCP 289


>At5g49470.2 68418.m06121 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 834

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/108 (21%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
 Frame = -2

Query: 467 LESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYS 288
           + +E+Q+++ +++   HS++  E+Q    E +      P +     + + ++TSS +S  
Sbjct: 410 VRNEQQKQQAYQSNSNHSVKS-ESQ--ACESIKASSNEP-MGYWSSSVNVNSTSSSSSCG 465

Query: 287 HCRCTSTNEFGAESMSLVTDVVWKDRTAESCV--GTAGTIC--VWVGT 156
               +  N+   +S  L  +++W+D T    +  G+ GT+   +W G+
Sbjct: 466 STSSSVMNKVDMDSDCLDYEILWEDLTIGEQIGQGSCGTVYHGLWFGS 513


>At5g49470.1 68418.m06122 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 483

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/108 (21%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
 Frame = -2

Query: 467 LESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYS 288
           + +E+Q+++ +++   HS++  E+Q    E +      P +     + + ++TSS +S  
Sbjct: 123 VRNEQQKQQAYQSNSNHSVKS-ESQ--ACESIKASSNEP-MGYWSSSVNVNSTSSSSSCG 178

Query: 287 HCRCTSTNEFGAESMSLVTDVVWKDRTAESCV--GTAGTIC--VWVGT 156
               +  N+   +S  L  +++W+D T    +  G+ GT+   +W G+
Sbjct: 179 STSSSVMNKVDMDSDCLDYEILWEDLTIGEQIGQGSCGTVYHGLWFGS 226


>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 437

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 25/105 (23%), Positives = 44/105 (41%)
 Frame = -2

Query: 455 EQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSHCRC 276
           E Q     + + H + Q  T+  V + L+  G    + +++    C N  S  SYS    
Sbjct: 277 ELQNTSSLSRKKHYVDQYTTKEPVEDGLIGRGEEEKVENEKKRPPCWNMLSSKSYSEEES 336

Query: 275 TSTNEFGAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGR 141
            + N+    + S   +  WK R     +GT+ T  V + T+ + R
Sbjct: 337 GAWNDEDTINRSSSKEDNWKRR--RFSIGTSATDKVILSTSMAAR 379


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 59  LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 169
           L++  CC   +  P    LPS   LH  +C  LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720


>At3g06620.1 68416.m00769 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 773

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
 Frame = -2

Query: 314 NTSSGTSYSHCRCTST---NEFGAESMSLVTDVVWKDRTAESCV--GTAGTIC--VWVGT 156
           N +S +S S C  TS+   N+   +S  L  +++W D T    V  G+ GT+   +W G+
Sbjct: 457 NANSTSSASSCGSTSSSVMNKVDTDSEGLEYEILWDDLTIGEQVGQGSCGTVYHGLWFGS 516


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,901,223
Number of Sequences: 28952
Number of extensions: 332412
Number of successful extensions: 1028
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)