Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0718
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.49 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.85 
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    27   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.4  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       26   4.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.9  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   7.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.9  

>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 264 SQSMDSTPIAASVVDEPDQKVAKELSDTGNSIDGSVV*TVGKTTPVHNNNVAVG 103
           S S  STPI++S+        +  +S +  S  GS+     KT    +N+   G
Sbjct: 159 SSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSASSNSTISG 212


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
 Frame = -3

Query: 491 GVSATVGVKVTMSNAVKNTEKTTVGVDCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSA 312
           G S+++   +T +    +T  T++ +     SS  T    + TT    +   +  P G +
Sbjct: 125 GGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGS 184

Query: 311 TSLSSSVTDNVRAQAEANQWTRPQLP-PPLLMSQTKKLPRNCPTLGTPLT 165
           +SLS+ +T  V   + ++      +P PP   S T       PT  T  T
Sbjct: 185 SSLSTPITPTVPPTSTSS----TSIPIPPTSTSSTDTNSSPLPTTSTSCT 230


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 504 RVVPALTVEPTNCTPPLFVTIVSLADYVTTSI 599
           RV  AL+  PTNC   ++   VSL  Y+T+++
Sbjct: 674 RVRGALSKFPTNCLRSVYSHTVSLMKYLTSAV 705


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 25/63 (39%), Positives = 29/63 (46%)
 Frame = -1

Query: 460 P*AMRSKIPRRPPSVWIAST*APALRFRAWLLPPHLGPAGSKPVTLLGLPPACRPALPTT 281
           P A  S  P  PPS+ + +  AP L   A + PP   PAG        LPPA  PA P  
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL--PAGMPAAP--PLPPAA-PAPPPA 479

Query: 280 CAP 272
            AP
Sbjct: 480 PAP 482



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = -1

Query: 364 PPHLGPA-GSKPVTL-----LGLPPACRPALPTTCAPKLKPI 257
           PP   P+ G +P  L     +  PPA  PA+P   AP L P+
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPL 406


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 510 VPALTVEPTNCTPPLFVTIVSLAD 581
           +PAL ++P+ CTP       SL D
Sbjct: 74  MPALRLKPSQCTPLFLAVYTSLRD 97


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 335  TGNPVGSATSLSSSVTDNVRAQAEANQWTRPQLPPPLL--MSQTKKLPRN 192
            TG+P G        +  N + +AE N   RP+    LL  +  TK L RN
Sbjct: 2455 TGHPDGIIRIWEKRLQSNAKLEAEKNNADRPKWRFHLLRQLQHTKGLGRN 2504


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 287 DNVRAQAEANQWTRPQLPPPLLM 219
           +N+ +Q     W +P +PP +L+
Sbjct: 722 ENIHSQNSLFNWVKPYIPPTILL 744


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = -3

Query: 506  SATRLGVSATVGVKVTMSNAVKNTEKTTVGVDCLHISSCVTVQGLVVTTPPGPSRIQTGN 327
            S++   ++A  GV      ++ N E T+      + +  VT       T  GPS     +
Sbjct: 827  SSSTTSLAANKGVNSNSITSL-NLESTSSVTSTAYTTDSVT--STTALTSQGPSSSVVSS 883

Query: 326  PVGSATSLSSSV 291
             + S TSLS+S+
Sbjct: 884  SLSSTTSLSTSI 895


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,008
Number of Sequences: 5004
Number of extensions: 74803
Number of successful extensions: 242
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)