Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0718
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    28   0.075
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 28.3 bits (60), Expect = 0.075
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = -3

Query: 299 SSVTDNVRAQAEANQWTRPQLPPPLL------MSQTKKLPRNCPTLGTPLTAVLYRPLAR 138
           S++   VR +  ++Q  +P    P +      MS T       P +GTP T ++Y+P   
Sbjct: 804 STILSPVREKLSSSQPMQPPQQNPYMFLPVSYMSTTMAGVIYPPVIGTPSTGMMYKPFLI 863

Query: 137 PRQST 123
           P Q++
Sbjct: 864 PEQTS 868


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 365 TTPPGPSRIQTGNPVGSATSLSSS 294
           TTP  PSR Q+   + SA ++S+S
Sbjct: 530 TTPVLPSRFQSHPSIDSANTISNS 553


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 138  TTPVHNNNVAVGDGQQGGAD 79
            + P +N +   GDG++GGA+
Sbjct: 1052 SNPSYNFSSVSGDGEEGGAE 1071


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 138  TTPVHNNNVAVGDGQQGGAD 79
            + P +N +   GDG++GGA+
Sbjct: 1048 SNPSYNFSSVSGDGEEGGAE 1067


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 520 RAGTTLQPGWGFLPPLG*KSP 458
           R    LQPG  F  PLG + P
Sbjct: 461 RDAVYLQPGMSFGEPLGLRRP 481


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 289 VTLDDRLVADPTGLPVW 339
           +TLDD++   P   P+W
Sbjct: 643 MTLDDKVFGFPLDRPMW 659


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 289 VTLDDRLVADPTGLPVW 339
           +TLDD++   P   P+W
Sbjct: 643 MTLDDKVFGFPLDRPMW 659


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 495 PGCRVVPALTVEPTNCTPPLFVTIVSLADY 584
           PG  ++PA T +   C  P +V  +S   Y
Sbjct: 307 PGVTMIPACTCKAVACLDP-YVYAISHPKY 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,468
Number of Sequences: 438
Number of extensions: 6316
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)