Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0718
(703 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37925.1 68415.m04655 copper transporter family protein simil... 31 0.98
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 30 1.7
At1g63700.1 68414.m07209 protein kinase, putative contains prote... 30 1.7
At3g20460.1 68416.m02590 sugar transporter, putative similar to ... 29 3.0
At1g59940.1 68414.m06752 two-component responsive regulator / re... 29 3.0
At5g11690.1 68418.m01366 mitochondrial import inner membrane tra... 28 5.2
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 28 5.2
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 28 5.2
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 28 6.9
At5g15760.1 68418.m01843 plastid-specific 30S ribosomal protein ... 27 9.1
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138... 27 9.1
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 27 9.1
At1g58070.1 68414.m06581 expressed protein 27 9.1
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 27 9.1
>At2g37925.1 68415.m04655 copper transporter family protein similar
to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family; supporting cDNA
gi|18496855|gb|AF466372.1|
Length = 145
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +1
Query: 28 VIVHGWNSNGNSAVNTMIRPALLAVS-----DCNVIVVDWRGLANGLYNTAV 168
V+V WN+ + T RP+LL + +C V+ W G G+Y A+
Sbjct: 8 VVVEAWNTTTTTQTQTPHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALAL 59
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 29.9 bits (64), Expect = 1.7
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = -1
Query: 481 PPLG*KSP*AMRSKIPRRPPSVWIAST*APALRFRAWLLPPHLGPAGSKPVTLLGLPPA- 305
PPL +SP + + P PP APA LPP P P + LPP+
Sbjct: 1126 PPLPHESPPSPPPQPPSSPPPPSSPPQLAPAPPPSDHCLPPPTAPLA--PAQSIALPPSS 1183
Query: 304 -CRPALPTTCAPKLKP 260
RP++P+ + L+P
Sbjct: 1184 ITRPSMPSHPSLPLQP 1199
>At1g63700.1 68414.m07209 protein kinase, putative contains protein
kinase domain, Pfam:PF00069; similar to MEK kinase
(MAP3Ka) [Arabidopsis thaliana] gi|4204912|gb|AAD10848
Length = 883
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 362 TPPGPS-RIQTGNPVGSATSLSSSVTDNVRAQAEANQWTRPQLP-PPLLMSQT 210
T PGPS RIQ+G S T + + + N+ +LP PPLL+S T
Sbjct: 316 TSPGPSSRIQSGAVTPLHPRAGGSTTGSPTRRLDDNRQQSHRLPLPPLLISNT 368
>At3g20460.1 68416.m02590 sugar transporter, putative similar to
ERD6 protein [Arabidopsis thaliana] GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 488
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +1
Query: 61 SAVNTMIRPALLAVSDCNVIVVDWRGLANGLYNTAVNGVPSVGQFLGNFLV-----WLIN 225
SA+N+++ A +AV+ V+ W+ LA ++ VP V +F+G F + WL
Sbjct: 181 SAINSLVMCASVAVTYLLGSVISWQKLA------LISTVPCVFEFVGLFFIPESPRWLSR 234
Query: 226 NG 231
NG
Sbjct: 235 NG 236
>At1g59940.1 68414.m06752 two-component responsive regulator /
response regulator 3 (ARR3) identical to response
regulator 3 GI:3953595 from [Arabidopsis thaliana]
Length = 231
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 305 LSSSVTDNVRAQAEANQWTRPQLPPPLLMSQTKKLPRNCPTLGTPLTAV 159
L S +T +V+ AE N+ PPP +S T + + T+ +PL+ V
Sbjct: 156 LRSYLTRDVKVAAEGNKRKLTTPPPPPPLSATSSMESSDSTVESPLSMV 204
>At5g11690.1 68418.m01366 mitochondrial import inner membrane
translocase subunit Tim17, putative similar to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}; contains Pfam profile
PF02466: Mitochondrial import inner membrane translocase
subunit Tim17
Length = 133
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 258 IGFSLGAHVVGNAGRQ-AGGRPNRVTGLDPAGPRWGGNNQALNRNAGAYVEAIHTDGGLL 434
IG++ GA VG + G N P G R+ G QA + NA GGLL
Sbjct: 19 IGYAFGAGAVGGSVYHFVRGAYN-----SPIGARYVGGTQAASMNAPRLGGTFAVFGGLL 73
Query: 435 GIFD 446
FD
Sbjct: 74 STFD 77
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 427 PPSVWIAST*APALRFRAWLLP-PH-LGPAGSKPVTLLGLPPACRPALPTTCAPK 269
PP++ AST P+ R +P P P G+ P + PP+ R PT P+
Sbjct: 175 PPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPR 229
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 427 PPSVWIAST*APALRFRAWLLP-PH-LGPAGSKPVTLLGLPPACRPALPTTCAPK 269
PP++ AST P+ R +P P P G+ P + PP+ R PT P+
Sbjct: 174 PPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPR 228
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 362 TPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQWTRPQLPPPLLMSQTK-KLPRNCP 186
TP PS+ + + G+ATS +DNV +N + PPP+ S K LPR P
Sbjct: 636 TPTNPSKTVSVDFFGAATSPHLGASDNV----ASNLGQPARSPPPISNSDKKPALPRPPP 691
>At5g15760.1 68418.m01843 plastid-specific 30S ribosomal protein 3,
putative / PSRP-3, putative similar to SP|P82412
Plastid-specific 30S ribosomal protein 3, chloroplast
precursor (PSRP-3) {Spinacia oleracea}; contains Pfam
profile PF04839: Plastid and cyanobacterial ribosomal
protein (PSRP-3 / Ycf65)
Length = 183
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Frame = -3
Query: 350 PSRIQTGNPVGSATSLSSSVTDNVRAQAEANQWTRPQLP-------------PPLLMSQT 210
PS+ + P+ SLS+ + + R + W + Q+P PP ++ +
Sbjct: 18 PSQKLSSKPIAHI-SLSTKLKPSSRPSLSCSTWNQGQIPARHSCINPGIFAYPPSNLTFS 76
Query: 209 KKLPRN-CPTLGTPLTAVLYRPLARPR 132
+LP + P LG VL +PL +P+
Sbjct: 77 HELPESESPPLGKKKMRVLVKPLEKPK 103
>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 579
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = -3
Query: 224 LMSQTKKLPRNCPTLGTPLTAVLYRPLARPRQSTTITLQSETASKAGRIMVFTAEFPLLF 45
+ S +KL CP +T +L R L PR + E + T+EFP L+
Sbjct: 397 MTSNERKLAGLCPLNAKEVTRLL-RALGAPRDARIYWAGGEPLGGKEALKPLTSEFPHLY 455
Query: 44 QPWTI 30
+ I
Sbjct: 456 NKYDI 460
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -1
Query: 364 PPHLGPAGSKPV-TLLGLPPACRPALPTTCAPKLKPINGLDP 242
PP PA S P L LPPA PT +P P++ P
Sbjct: 37 PPPSPPADSSPPPALPSLPPAVFSPPPTVSSPPPPPLDSSPP 78
>At1g58070.1 68414.m06581 expressed protein
Length = 284
Score = 27.5 bits (58), Expect = 9.1
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -3
Query: 326 PVGSATSLSSSVTDNVRAQAEANQWTRPQLPPPLLMSQTKKL--PRNCPTLGTPLTAVLY 153
PV + T S S + + A NQ +P+ P +SQT KL P P++ TA L
Sbjct: 40 PVQTHTMNSKSASP-IAASRSINQNAKPRSPG---LSQTVKLVIPTASPSISQ--TAKLV 93
Query: 152 RPLARPRQSTTITLQS 105
P+A P S T + S
Sbjct: 94 SPIASPSISQTASSSS 109
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/87 (25%), Positives = 36/87 (41%)
Frame = -3
Query: 359 PPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQWTRPQLPPPLLMSQTKKLPRNCPTL 180
PP Q + SATS S+TD+ R + + + P + PP + + P+
Sbjct: 458 PPSAPTSQVSSDQASATS---SLTDSSRLFSSTSLSSTPPITPPDAFQSPQV---STPSS 511
Query: 179 GTPLTAVLYRPLARPRQSTTITLQSET 99
P+T + P QS++I T
Sbjct: 512 AVPITEPVSEPKKPEAQSSSILSTQST 538
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,251,908
Number of Sequences: 28952
Number of extensions: 465264
Number of successful extensions: 1627
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1621
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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