Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0717
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   3.3  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   5.8  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   7.7  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 115 YSNAQRNPITLTEDHFPTGNDPAAPFNNN 201
           Y   Q+N I L ++  PT N P  P  +N
Sbjct: 874 YEEIQKNEIVLKDEQDPTSNFPEIPGTSN 902


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 652 KEVNVSNSNAQAVFVDTRSVGVNNFNVLSIVCSQ 551
           +E ++S ++  ++FV   S  VN F+V S+  S+
Sbjct: 176 REKSISKASEYSIFVGDLSPNVNEFDVYSLFASR 209


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 216 NNTRSQWHCYDDDNPIVKDAFLR 284
           +N    +  ++DD P++KD F+R
Sbjct: 132 DNDGDDYSFFEDDLPVIKDTFMR 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,505,413
Number of Sequences: 5004
Number of extensions: 73093
Number of successful extensions: 203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)