Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0717
         (843 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   2.9  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    25   3.8  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     25   3.8  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   5.0  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   6.7  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +3

Query: 276  FLRSGNYNVIVVDWSS-FSLSTYSTAVMAVTG--VGSSIATFLKNLKLPLNKVHIVGFNL 446
            +L +GN  V ++D    F++    + V A  G  +G+S A    N      K  IVG  +
Sbjct: 2669 YLYAGNSPVSLIDPDGQFAILLIVSIVTAAVGAYLGASAANKSWNPAKWEVKKAIVGATM 2728

Query: 447  GAHVAGVTGRNLEGKVARITG 509
            GA V G     + G +  + G
Sbjct: 2729 GAIVGGFAPVGIAGSITFLAG 2749


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 91  GSLNKYYYYSNAQRNPITLTEDHF 162
           GS + YYY  N  R  ITL + ++
Sbjct: 323 GSGHLYYYEENGDRRKITLNDVYY 346


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 535 KQRTTTGNKRCSIR*SYSHRRIWCQQKRLGHCY 633
           K R+ T   RC +R +  H+R W +      CY
Sbjct: 446 KNRSLTEMGRCMLRDAGMHKRFWAEAVNTA-CY 477


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 393  LKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARI 503
            L+ +KL + K H    ++   +  +  R  EGK+ R+
Sbjct: 972  LEEMKLAIEKAHEGSSSIKKEIVALQKREAEGKMKRL 1008


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = -3

Query: 130 SVHCYSNNIYLNFQIAPSFEWHLRCKRQMQRPT 32
           S++ YSN++Y+ F +    +      R+ + P+
Sbjct: 196 SIYSYSNHVYIRFAVGELLQRPAADSRRQEGPS 228


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 899,491
Number of Sequences: 2352
Number of extensions: 18684
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 89305416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)