Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0717
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   2.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   4.7  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 527 DWENNVLRLGTNDAQYVEVIH 589
           DW  N+ + G N  + +E+IH
Sbjct: 232 DWLFNLTKYGKNQIKLLEIIH 252


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -3

Query: 829 WQYPFQLEILGNYLRLSPLLCC---MISVMFAMRDCCSKNF 716
           ++YP+   +LG    LS +LC    MI + F      S+ F
Sbjct: 522 YEYPWWSHVLGWLCGLSSMLCIPGYMIYIWFTTSGTISEKF 562


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -3

Query: 829 WQYPFQLEILGNYLRLSPLLCC---MISVMFAMRDCCSKNF 716
           ++YP+   +LG    LS +LC    MI + F      S+ F
Sbjct: 575 YEYPWWSHVLGWLCGLSSMLCIPGYMIYIWFTTSGTISEKF 615


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 279 LRSGNYNVIVVDWSSF 326
           +++G+Y V+  +WSSF
Sbjct: 379 IQNGDYVVLETEWSSF 394


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 279 LRSGNYNVIVVDWSSF 326
           +++G+Y V+  +WSSF
Sbjct: 85  IQNGDYVVLETEWSSF 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,039
Number of Sequences: 438
Number of extensions: 5365
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)