Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0716
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 50 3e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 50 5e-07
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 46 5e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 45 1e-05
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 42 1e-04
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 40 3e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 40 4e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 40 5e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 38 0.001
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 38 0.002
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.002
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 38 0.002
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 37 0.004
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 36 0.005
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 36 0.007
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 36 0.009
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 35 0.012
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 35 0.012
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 35 0.015
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 34 0.020
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 34 0.020
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.027
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 33 0.047
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 32 0.082
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 31 0.14
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.14
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.25
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.8
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 28 1.8
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 27 4.1
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.4
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 26 5.4
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 9.4
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 9.4
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 9.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 9.4
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 50.4 bits (115), Expect = 3e-07
Identities = 21/66 (31%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Frame = +2
Query: 338 PNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQL-- 511
PN + +++ N+ +V + +L+Q F Y ++V K++RD + K++G+GFV+ ++ DQ
Sbjct: 27 PNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLK 85
Query: 512 RWQYKH 529
W+ K+
Sbjct: 86 AWREKN 91
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 49.6 bits (113), Expect = 5e-07
Identities = 19/49 (38%), Positives = 33/49 (67%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
+++ N+A E EE LW+ FG G+I V+I+RD +TN KG+ ++ ++
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 46.4 bits (105), Expect = 5e-06
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +2
Query: 341 NTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
N ++YI N+ E+ E LFG +G I S+ +++D Q +K +G+GFV N++
Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHE 312
Score = 44.0 bits (99), Expect = 3e-05
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +2
Query: 335 SPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
+P + S+Y+ + V E L++LF G + S+++ RD T +S GY +V N +
Sbjct: 76 APTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNME 132
Score = 39.1 bits (87), Expect = 7e-04
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+++I N+ EV++ L F +G I S KI+ D Q KSKG+GFV
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFV 409
Score = 35.9 bits (79), Expect = 0.007
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRIAA-------GIAFVLYEHQYEAERAIQNI 173
N++I NL + + LH F+ FG+I++ ++A G FV ++ A AI+++
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 174 NG 179
NG
Sbjct: 229 NG 230
Score = 35.1 bits (77), Expect = 0.012
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRIA-------AGIAFVLYEHQYEAERAIQNI 173
N+YI NL E+T Q LF QFG I + + G FV Y + A++A+ +
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 174 N 176
N
Sbjct: 322 N 322
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/52 (36%), Positives = 33/52 (63%)
Frame = +2
Query: 332 NSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+S T ++++ ++ V++ L Q F YG IV ++I D Q+ +SKGYG+V
Sbjct: 258 DSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYV 309
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = +2
Query: 323 GEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNY 502
G+ S + ++++ N++ E L FG G I S+++ D Q+ + KG+G+VT +
Sbjct: 358 GDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDI 417
Query: 503 DQLR 514
D +
Sbjct: 418 DSAK 421
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +2
Query: 347 WSIYIYNIALEVEELTLWQLFGP-YGAIVSVKIIRDHQTNKSKGYGFV 487
+SI++ +++ V E ++ LF Y + S KI+ D QTN S+GYGFV
Sbjct: 186 YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFV 233
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/62 (29%), Positives = 35/62 (56%)
Frame = +2
Query: 323 GEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNY 502
G N N +++ IA ++E L Q+F +G + V+I+R+ T S+G+GF++
Sbjct: 95 GSENLGN--DLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTV 152
Query: 503 DQ 508
++
Sbjct: 153 EE 154
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.9 bits (89), Expect = 4e-04
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Frame = +3
Query: 15 NLYICNLPNELT--LQGLHGLFAQFGRIINSRIAA--------GIAFVLYEHQYEAERAI 164
NL++ NL + + Q L LF++FGRI + +A+ G FV + H +EA +AI
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 165 QNINGSTPPGFLHPLTVKYANKSNPHKHKNIIILLQKIP 281
+NG L V YA K K + I Q P
Sbjct: 480 NTLNGVL--FGKKRLFVNYAEKREDRKKRLSAIFSQSYP 516
Score = 35.9 bits (79), Expect = 0.007
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRI-------------INSRIAAGIAFVLYEHQYEAE 155
++Y+ NLP+ LH LF FG +S+ AF+ +E++ A+
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 156 RAIQNINGSTPPGFLHPLTVKYANKSNPHKHK 251
AI ++NGS+ G + L V+Y + +K+K
Sbjct: 81 NAIASLNGSSFQG--NTLKVEYTHIVERYKNK 110
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 395 LWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
L +LF +G I S + T SKGYGFV+
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTEISKGYGFVS 468
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 39.5 bits (88), Expect = 5e-04
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
IYI N+ ++ E + +F +G V + ++RD +T KSKG+ F+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFL 77
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 38.3 bits (85), Expect = 0.001
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRIA-------AGIAFVLYEHQYEAERAIQNIN 176
+Y+ NLP + + L LF G +I +RIA G V +E++ +A +I+ +N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 177 GSTPPGFLHPLTVKYANKSNP 239
G G PL + YA+ + P
Sbjct: 342 GYRYGG--RPLQLSYAHYATP 360
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 493 EKLRPTAMAIQALNGYLLHGQPLSVSF 573
E A +I+ LNGY G+PL +S+
Sbjct: 328 ENENDAASSIEKLNGYRYGGRPLQLSY 354
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLRWQYK 526
++++ ++ + +E + + F YG I ++++R+ T KS GY FV L+ YK
Sbjct: 101 TMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYK 159
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.5 bits (83), Expect = 0.002
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLRWQYKH 529
++++ N+A + ++ L F G I ++ + +T +++GYGFVT + + K
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKE 65
Query: 530 *TD--IYCTVNLSL*VSKRKRDNVDTKDFKNDTVIIKIDKSNNIMIK 664
+ ++ + + RKR VDT K I+ D ++I+
Sbjct: 66 LKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIR 112
Score = 28.3 bits (60), Expect = 1.3
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Frame = +3
Query: 18 LYICNLPNELTL-QGLHGLFAQFGRIINSRIAA-------GIAFVLYEHQYEAERAIQNI 173
L I NLP + Q L F++FG++ +I G AFV + + AE A+ ++
Sbjct: 109 LIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSL 168
Query: 174 NGSTPPGFLHPLTVKYA 224
NG+ G P+ V +A
Sbjct: 169 NGTEIDG--RPIAVDWA 183
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFG-----RIINSRIAAGIAFVLYEHQYEAERAIQNING 179
L+I NL ++T + ++ LF ++G R+ N+ G AFV+YE+ +A RA + ++G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72
Score = 29.5 bits (63), Expect = 0.58
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
++I N++ ++ ++ LFG YG V+ IR T +++G FV N R
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYG---PVRQIRLGNTVQTRGTAFVVYENVQDAR 64
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 344 TWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
T +++ N+ E L LFGP+G + V + D +TN KG+ ++ + D
Sbjct: 322 TKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDAD 375
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
++I + E + +L F +G ++ ++RD T +S+G+GF+T +N
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKN 213
Score = 33.1 bits (72), Expect = 0.047
Identities = 13/61 (21%), Positives = 27/61 (44%)
Frame = +2
Query: 317 AVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMR 496
A+ T +++ + + E F +G ++ ++ D T + +G+GFVT
Sbjct: 237 AIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE 296
Query: 497 N 499
N
Sbjct: 297 N 297
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 35.9 bits (79), Expect = 0.007
Identities = 19/83 (22%), Positives = 38/83 (45%)
Frame = +2
Query: 257 NNTFTKNTIVRPYQWINHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSV 436
+NT +P ++ +++ + +++ N+ E + L + FG G I V
Sbjct: 198 SNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRV 257
Query: 437 KIIRDHQTNKSKGYGFVTMRNYD 505
+++ T K KG+GFV + D
Sbjct: 258 RLMTFEDTGKCKGFGFVDFPDID 280
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 35.5 bits (78), Expect = 0.009
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRI--AAGIAFVLYEHQYEAERAIQNINGS 182
+++ L + L+ + L F FGRI+N +I G FV Y + AE+AI + G+
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGA 355
Score = 29.1 bits (62), Expect = 0.76
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 347 WSIYIYNIALEVEELTLWQLFGP-YGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLRWQY 523
+SI++ ++ E+ L+ F Y + S KII D T S+ YGFV + + +
Sbjct: 182 FSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHAL 241
Query: 524 KH*TDIYC 547
H C
Sbjct: 242 MHMQGYLC 249
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
IYI N+ L + E + +L P+G ++S ++I++ SKG+ F +N
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 359 IYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
+ NI + + + +F P+G I V + RD Q N+SKG+G++ RN
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQ-NRSKGFGYIQYRN 389
Score = 29.1 bits (62), Expect = 0.76
Identities = 12/55 (21%), Positives = 28/55 (50%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
++++ +A + L+ F G + +I+RD + +SKG +V + D ++
Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQ 295
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 34.7 bits (76), Expect = 0.015
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
++++ N+ V+E L+ F G +V + + +SKGYGFV+ +++
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFE 151
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 34.3 bits (75), Expect = 0.020
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +2
Query: 329 HNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
H +P +++ + ++ L +F +G I+S ++IRD +T S Y F+ N +
Sbjct: 238 HVAPPENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKES 297
Query: 509 LRWQY 523
+ Y
Sbjct: 298 VEKAY 302
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 34.3 bits (75), Expect = 0.020
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTM 493
+Y+ NI +V E + F YG + SV+I + + N+ KG+G+V M
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIPK--RFNQHKGFGYVVM 803
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
++Y+ N +EL + +LF YG +V V+ + N ++ + +V MR D+
Sbjct: 667 NLYVTNFPPTYDELDITKLFSAYGNVVDVR-FPSLRYNTNRRFCYVQMRKPDE 718
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 33.9 bits (74), Expect = 0.027
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGF 484
+Y+ NI E+ E + +F G + S +++ D ++ + KGYGF
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGF 50
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 33.1 bits (72), Expect = 0.047
Identities = 14/55 (25%), Positives = 31/55 (56%)
Frame = +2
Query: 347 WSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
++ ++ N++ ++ E L FG + S++++ D T +S+G+G+V D L
Sbjct: 94 FTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTL 146
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.3 bits (70), Expect = 0.082
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +2
Query: 332 NSP-NTWSIYIYNIALEVE--ELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNY 502
NSP + ++Y+ N+ V + L LF P+G+I+S + + SKGYGFV R
Sbjct: 376 NSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQI 435
Query: 503 D 505
+
Sbjct: 436 E 436
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 332 NSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGF 484
++ T ++YI + + L +G + S K I D +TN KGYGF
Sbjct: 291 STSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.5 bits (68), Expect = 0.14
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 105 IAAGIAFVLYEHQYEAERAIQNINGST 185
+ +GIAFV + +Q + ++AI+ +NG T
Sbjct: 87 VPSGIAFVTFNNQEDVDKAIETLNGKT 113
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++++ N+A V E L+ F P+G I+SV + R + + Y FV
Sbjct: 7 TVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKA-VDRSYAFV 51
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIIN-------SRIAAGIAFVLYEHQYEAERAIQNIN 176
+++ NL +T L+ F FG II+ + AFV ++ +A+ A++N+N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 177 GS 182
S
Sbjct: 68 YS 69
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 6 ADWNLYICNLPNELTLQGLHGLFAQFGRI--INSRIAAGIAFVLYEHQYEAERAIQNI 173
A N+YI N + LT++ L F +FG I +N AFV + A AI I
Sbjct: 412 ASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRI 469
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +3
Query: 6 ADWNLYICNLPNELTLQGLHGLFAQFGRIINSRIAA--GIAFVLYEHQYEAERAIQNIN 176
A N++I NLP+ + + F +FG+I + +I + IAFV + + +A + ++ ++
Sbjct: 297 ASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 541 DIRLMLVLPSQLVVISHCNKTISFTFISLM 452
DIRL V P + HCN I+ + M
Sbjct: 297 DIRLYFVTPDDIYTFDHCNNWIAIVTRNFM 326
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRI 92
LY+ NLP + +H LF+ +G +
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNV 26
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 481 FCYNEKLRPTAMAIQALNGYLLHGQPLSVSFKTQK 585
F + L + A++ L GY L+G+P+ + + K
Sbjct: 72 FVVFDNLENASRALKDLQGYPLYGKPMMIQYSKSK 106
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 332 NSPNTWSIYIY-NIALEVEELTLWQLFGPYGAIVSVKIIR 448
N PNTW Y++ + L++++ L L P + ++I R
Sbjct: 1699 NDPNTWKEYVHLDDHLKLQDFLLSHLHNPLPFELEIRIKR 1738
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
+I + N+ V + + ++FG YG I + + ++ +KGY ++ +DQ
Sbjct: 100 TILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQ 152
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 389 LTLWQLFGPYGAIVSVKIIR 448
+++WQL PY VSV I++
Sbjct: 691 ISVWQLLSPYWPTVSVAIVQ 710
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -2
Query: 568 LQREVDRAIDIRLMLVLPSQLVVISHCNKTISFTFISLMIPNNL 437
L + + +++D L L + +L + +K +SFT IS IPN++
Sbjct: 1287 LLKTISKSLDA-LQLTVEEELSNLYSLSKDLSFTDISGHIPNSI 1329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,254
Number of Sequences: 5004
Number of extensions: 59160
Number of successful extensions: 209
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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