Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0716
(791 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 50 2e-06
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 50 2e-06
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 50 2e-06
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 48 1e-05
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 47 2e-05
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 46 4e-05
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 46 5e-05
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 44 1e-04
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 42 6e-04
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 42 8e-04
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 41 0.001
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 40 0.002
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 39 0.004
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.009
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 38 0.012
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.050
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.087
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 33 0.20
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 33 0.27
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 33 0.27
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 33 0.27
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 32 0.46
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.61
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 32 0.61
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.61
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 30 1.9
SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 30 1.9
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 30 1.9
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 29 3.3
SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 29 4.3
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_10859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 28 7.5
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 28 7.5
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 28 7.5
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 28 10.0
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 56.8 bits (131), Expect = 2e-08
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNI 173
NLYI LP ++ + + LF FG+II S++ G FV ++ + EA+ AI ++
Sbjct: 114 NLYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDDL 173
Query: 174 NGSTPPGFLHPLTVKYANKSN 236
N T PG LTVK+AN N
Sbjct: 174 NNKTLPGTNVKLTVKFANPPN 194
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +2
Query: 335 SPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
+P W I++Y + E L L++LF PYGAI ++++ D KGYGFV M NY++
Sbjct: 268 TPQGWCIFVYGLPQEATPLFLYKLFSPYGAITNIELKLD------KGYGFVNMSNYEE 319
Score = 37.9 bits (84), Expect = 0.009
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +2
Query: 302 INHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYG 481
IN+ + S ++ I + + + + ++FG G + S K+IRD T +S GY
Sbjct: 12 INNHEPMENGTSDERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYA 71
Query: 482 FVTMRNYD 505
FV N D
Sbjct: 72 FVNYDNPD 79
Score = 32.7 bits (71), Expect = 0.35
Identities = 14/46 (30%), Positives = 30/46 (65%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++YI + +++E + LF P+G I++ K+++D + + +G GFV
Sbjct: 114 NLYISGLPKDMKEEEVEALFKPFGKIITSKVLKD-VSGEGRGTGFV 158
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI--------AAGIAFVLYEHQYEAERAIQN 170
NL I +P ++ + + +F G + + ++ + G AFV Y++ +A +A++
Sbjct: 28 NLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVRE 87
Query: 171 INGSTPPGFLHPLTVKYANKSNPH-KHKNIII 263
+NG+ L V +A S+ K+ N+ I
Sbjct: 88 MNGARLQN--KTLKVSFARPSSTEIKNANLYI 117
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRIAA--------GIAFVLYEHQYEAERAIQN 170
NLY+CN+P +L F +G I+N R+ G FVLY+ + EA+ AI +
Sbjct: 134 NLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISS 193
Query: 171 INGSTPPGFLHPLTVKYANKSN 236
++G+ PG L ++YA+ ++
Sbjct: 194 LSGTFFPGSTMGLQIRYADDNS 215
Score = 44.8 bits (101), Expect = 8e-05
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +2
Query: 290 PYQWINHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKS 469
P Q + H++ + +P ++Y+YNI + + + LFG G + V I+ D Q +
Sbjct: 257 PQQKMTHMNG-NKSQAPPGCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQC 315
Query: 470 KGYGFVTMRNYDQ 508
KG+ FVTM ++
Sbjct: 316 KGFCFVTMATQEE 328
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++Y+ NI ++ E + F YG IV+ +++RD T KG GFV
Sbjct: 134 NLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFV 179
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINS---------RIAAGIAFVLYEHQYEAERAIQN 170
LY+ N+ + +G+ LF Q G I+N + G FV Q EA+ AIQ
Sbjct: 277 LYVYNIGYDANQEGITALFGQCG-IVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQT 335
Query: 171 ING 179
+NG
Sbjct: 336 LNG 338
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 50.4 bits (115), Expect = 2e-06
Identities = 21/54 (38%), Positives = 36/54 (66%)
Frame = +2
Query: 338 PNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
PN + I+ ++ EV + +L + F Y + + KI+RD ++NKSKGYGFV+ ++
Sbjct: 214 PNDFRIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKD 267
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = +2
Query: 338 PNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
P+ +++IY++ E + L Q F P+G ++S K+ D QTN SK +GFV+ N
Sbjct: 274 PDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDN 327
Score = 35.9 bits (79), Expect = 0.038
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI--------AAGIAFVLYEHQYEAERAIQN 170
NL+I +LP E T L F FG +I++++ + FV Y++ A+ AIQ+
Sbjct: 278 NLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQH 337
Query: 171 ING 179
+NG
Sbjct: 338 MNG 340
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/50 (48%), Positives = 34/50 (68%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
+IYI + ++ + +L +FGPYGAI + IIR QT KSKG+G+VT N
Sbjct: 64 TIYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRT-QTGKSKGFGYVTYEN 112
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/48 (39%), Positives = 32/48 (66%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMR 496
+Y+ ++ + E + +F P+G + SV++I D +TN+SKGYGFV R
Sbjct: 244 LYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFR 291
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNI 173
NLYI NLP L +F+++G++I++RI + G+ F E + E+ I++
Sbjct: 180 NLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKDF 239
Query: 174 NGSTPPGFLHPLTVKYANKSNPHKHK 251
N PG + L VK+A+ P K +
Sbjct: 240 NKKMLPGCIQELVVKFAD-GGPKKRQ 264
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
++YI N+ +E L +F YG ++S +I+RD TN SKG GF M + ++
Sbjct: 180 NLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTN-SKGVGFARMESAEK 231
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/55 (40%), Positives = 28/55 (50%)
Frame = +2
Query: 323 GEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
GE T ++YI + + L +L YG I+S K I D TN KGYGFV
Sbjct: 93 GEEKLSKT-NLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFV 146
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 46.0 bits (104), Expect = 4e-05
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLRWQYK 526
S++I N+ ++EE L +LF G + SV++IRD +T KG+G+V + D + + K
Sbjct: 57 SVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALK 115
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 45.6 bits (103), Expect = 5e-05
Identities = 18/50 (36%), Positives = 33/50 (66%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
++++ N++ + +EL + + F PYG + V I+ D +T KSKG G V +R+
Sbjct: 320 TLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKGCGVVKLRH 369
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +2
Query: 338 PNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYG 481
P+ +++IY++ E + L Q F P+G ++S K+ D QTN SK +G
Sbjct: 226 PDGSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFG 273
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +2
Query: 395 LWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
L Q F P+G ++S K+ D QTN SK +GFV+ N
Sbjct: 278 LMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDN 312
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI 107
NL+I +LP E T L F FG +I++++
Sbjct: 230 NLFIYHLPQEFTDADLMQTFQPFGTVISAKV 260
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSV-KIIRDHQTNKSKGYGFVTMRNYD 505
+++I N+ EV+E L+ F +G I+ KI+RD T SKG+ F+ ++D
Sbjct: 101 NLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFD 153
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +2
Query: 320 VGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+ E N T IY+ + +V E +W+LF G +V+V + +D T +GYGFV
Sbjct: 6 IAERNQDAT--IYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFV 59
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
+++ I E + L + F +G I +I+D T KSKGYGFVTM D
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSD 62
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 41.5 bits (93), Expect = 8e-04
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +2
Query: 356 YIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
Y+ +A EV+E L F P+G I V+I D+ T+K +G+GFV
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFV 51
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 329 HNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
+N P +++ + E TL + F YG + V +I D T KS+G+G+VT +Y
Sbjct: 9 NNDPRA-KLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKV 67
Query: 509 LR 514
R
Sbjct: 68 TR 69
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++YI N+ +++ L + F PYG I S K+++D + N SKG+GFV
Sbjct: 213 NLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGN-SKGFGFV 257
Score = 35.1 bits (77), Expect = 0.066
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
++Y+ N ++++ + ++ G IVS+K++ D + KSKG+GFV+ ++
Sbjct: 110 NVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPE-GKSKGFGFVSFETPEE 161
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNI 173
N+Y+ N +++ + + + A+ G+I++ ++ + G FV +E EAE A+ +
Sbjct: 110 NVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVL 169
Query: 174 NG 179
NG
Sbjct: 170 NG 171
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +2
Query: 335 SPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+P+ ++Y+ N+ + L ++F YG +V V I+RD +T +S+G F+
Sbjct: 6 APSKSTVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFI 56
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIIN--------SRIAAGIAFVLYEHQYEAERAIQNI 173
+Y+ NLP LT LH +F ++G+++ +R + G+AF+L+ + A+ A+ +
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAV 71
Query: 174 N 176
N
Sbjct: 72 N 72
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +2
Query: 293 YQWINHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSK 472
+Q + G+H T +I + N++ E E L +LF P G I + + +D TN+SK
Sbjct: 166 HQQLKEDDGSGQHE---TATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSK 222
Query: 473 GYGFV 487
G+ F+
Sbjct: 223 GFAFI 227
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/53 (33%), Positives = 34/53 (64%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
+YI N+ +E + Q F +G + V I+RD ++ +S+G+GFV +++ DQ+
Sbjct: 11 LYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQI 62
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 308 HISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
H + +P +++ N+ E E L PYG I + ++R T SKGYGFV
Sbjct: 100 HDKTLNVSPAPPESLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFV 159
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +2
Query: 356 YIYNIALEVEELTLWQLFGPYGA-IVSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
YI N++ V+E L + F +G +V VK+I D +T + +G+GFVT + +++
Sbjct: 8 YIGNLSYSVDEQALEEKF--HGCDVVDVKVITDRETGRPRGFGFVTFGSKEEM 58
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
+++I N++ + + + LF +G I K++ DH T SKG FV R+ + +
Sbjct: 417 TVFIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESV 470
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 37.5 bits (83), Expect = 0.012
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 356 YIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTM 493
YI N++ V+E L + F +V V++I D +T + +G+GFVT+
Sbjct: 85 YIGNLSYSVDEQALEEKFHDCN-VVDVRVITDRETGRPRGFGFVTL 129
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 37.1 bits (82), Expect = 0.016
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 347 WSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
W +++ NI E +E + +LF YG I ++ + D +T KGY V + +
Sbjct: 293 WILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKE 346
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 36.3 bits (80), Expect = 0.028
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +2
Query: 407 FGPYGAIVSVKIIRDHQTNKSKGYGFV 487
F +G I V+I+RDH+T ++KGYG+V
Sbjct: 73 FESFGDIEYVQIVRDHKTRENKGYGYV 99
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 35.5 bits (78), Expect = 0.050
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMR 496
++Y+ N+ +V++ L Q+F YG+I+ K+ D KGY F+ R
Sbjct: 616 TVYVGNLPPDVKDYELQQMFSQYGSILETKVFAD------KGYAFINAR 658
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRIAA--GIAFVLYEHQYEAERAIQNI--NGST 185
+Y+ NLP ++ L +F+Q+G I+ +++ A G AF+ + +R + + +G+
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILETKVFADKGYAFINARGEKRRQRCLTSSRRHGNN 676
Query: 186 PPGFLHPL--TVKYANKSNPH 242
LH L T SN H
Sbjct: 677 SNTTLHTLAPTTHKPPPSNQH 697
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 434 VKIIRDHQTNKSKGYGFVT 490
V++++D NKSKG+GFV+
Sbjct: 542 VRVVKDPAKNKSKGFGFVS 560
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 34.7 bits (76), Expect = 0.087
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
IYI ++ ++ E + +F +G +V + ++ T K KGYGF+ N
Sbjct: 201 IYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYEN 249
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+Y+ +I E+ E + F P+G I + + D K KG+ FV
Sbjct: 104 VYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFV 148
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 34.3 bits (75), Expect = 0.11
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +2
Query: 425 IVSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
++SVK+I D +T + +G+GFVT + D++
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGSEDEM 63
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAERAIQNINGS 182
+Y LP T + L L FG++ G A+V+++ +A+RA+ +N S
Sbjct: 5 VYCGRLPATATEKDLENLVKVFGKVREVDFKEGYAYVVFKENKDADRAVAALNNS 59
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 33.1 bits (72), Expect = 0.27
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAERAIQNINGS 182
++Y+ N+P ++ L +F ++G+I R FV + + A +AI ING+
Sbjct: 3 SIYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRDYGFVYFAKRESAVQAIDGINGA 58
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDH 454
SIY+ N+ L + E L +F YG I V+ IRD+
Sbjct: 3 SIYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRDY 37
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = +2
Query: 335 SPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
+P +Y+ ++ V + + ++F YG + +V + D N S+G+ +V + ++
Sbjct: 1153 TPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECE 1212
Query: 515 WQYKH 529
KH
Sbjct: 1213 KALKH 1217
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 33.1 bits (72), Expect = 0.27
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
I++ E E L F YG + KI+RD + SKGY F+T + +
Sbjct: 10 IFVKGFNRETTESELRAFFEEYGVVKESKIVRD-KHGVSKGYAFITFESQE 59
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 32.3 bits (70), Expect = 0.46
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 422 AIVSVKIIRDHQTNKSKGYGFVTMRN 499
A + +K++RD +TNK KGY FV N
Sbjct: 131 APLEIKMVRDRETNKFKGYCFVNFPN 156
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 32.3 bits (70), Expect = 0.46
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 341 NTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKG 475
N +++ NI +V L FG +G +V +II D +SKG
Sbjct: 77 NKCKVFVGNIGFKVRARELKDFFGYFGDVVYAQIIMDRVKKRSKG 121
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 32.3 bits (70), Expect = 0.46
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 344 TWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++ ++I ++ +V E L +LF +G + V I+RD ++ KS+ GFV
Sbjct: 523 SFPVWIGGLSEDVTENVLLELFNKFGPVKDVVILRD-ESGKSRQSGFV 569
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 31.9 bits (69), Expect = 0.61
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 416 YGAIVSVKIIRDHQTNKSKGYGFV 487
YG IV+V ++RD +T K KG+ F+
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFL 25
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 31.9 bits (69), Expect = 0.61
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 416 YGAIVSVKIIRDHQTNKSKGYGFV 487
YG IV+V ++RD +T K KG+ F+
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFL 25
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
S+ + N+ L Q+F YG + + I RD T++S+G+ FV
Sbjct: 17 SLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFV 62
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR--WQY 523
S+++ N++ L F YG +V KI+ + + ++ +G VTM ++ Q+
Sbjct: 350 SLWVANLSSITRAADLKTRFSQYGKVVGAKIVTNSKAPGAQCFGLVTMTTSEEAAKCIQH 409
Query: 524 KH*TDIY 544
H T+++
Sbjct: 410 LHRTELH 416
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 404 LFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+F +G I+S ++IRD +T +S Y F+
Sbjct: 139 IFSRFGTILSCEVIRDQKTGESLQYAFI 166
>SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 266 FTKNTIVRPYQWINHISAVGEHNSPNTWSIYIYNIALEVEELTLWQ--LFGPYGAIVS 433
FTK ++ +I +I++ HNSP+ I +Y +E E +Q +F AIVS
Sbjct: 262 FTK-AVIDTGNFIGNITSTVSHNSPSPKQIQVYAFGIEGETAANYQVRVFSGVSAIVS 318
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +2
Query: 302 INHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYG 481
+ I G+ + + IY+ +I E + + F +G + +++ R ++ +SKGY
Sbjct: 83 VKKIKPKGDEDELSPGVIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYA 142
Query: 482 FV 487
FV
Sbjct: 143 FV 144
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 395 LWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
L Q F +G + ++RD T +S+G+GF+T ++
Sbjct: 124 LRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKD 158
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAERAIQNING 179
+Y+ LP T + F +GR+ + + FV +E +A+ A+ NG
Sbjct: 5 VYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNNYGFVEFEDDRDADDAVYECNG 58
>SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = +2
Query: 380 VEELTLWQLFGPYGAIVSVKII---RDHQTNKSKGYGFVT-MRNYD 505
+ E L +LFG YG + SVKI+ + + ++++ GFV MR D
Sbjct: 217 MNEEMLMRLFGKYGPLASVKIMWPRTEEEKSRNRNCGFVAYMRRKD 262
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/62 (24%), Positives = 33/62 (53%)
Frame = +2
Query: 326 EHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
++ NT SI++ + + + + + A +V II D +T + +G+GFVT + +
Sbjct: 89 KNKKTNTMSIHVPTNVEDSVKCLVASIPLCFVASEAVNIITDRETGRPRGFGFVTFGSKE 148
Query: 506 QL 511
++
Sbjct: 149 EM 150
>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1462
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 781 LIAQSNKYLNKNPTDFTRSCSVWCCVLKVFSALFVS 674
+ Q+NK N+NP F+ + + W +L++ L V+
Sbjct: 1066 IFLQNNKVANENPISFSSAETQWMHLLRILGQLVVN 1101
>SB_10859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 88 LPNCANNPCKPCKVNSLGRLQM*RFQ 11
LP CA+N C+ C + + + Q+ RF+
Sbjct: 38 LPKCAHNICRECLLGIIEKAQLERFE 63
>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 477 MVLLQ*EITTNCDGNTSIKRISIARSTSLCKFQ 575
M L+ E+T NCDG+ KR++ T L K +
Sbjct: 112 MTHLEDEVTVNCDGDMRQKRLTPLTQTELPKME 144
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +3
Query: 33 LPNELTLQGLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAERAIQNING 179
LP ++ + +G+I + + G FV ++ +AE A+ ++NG
Sbjct: 696 LPRDVRESDVEKFLRGYGKIRDISLKRGYGFVEFDDHRDAEDAVHDLNG 744
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +2
Query: 326 EHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+ N PN+ S+ + N++ + T L + + K+I D ++ +S+G+GFV
Sbjct: 283 DQNPPNS-SLIVRNLSYDT---TTDSLGAAFEGCSNAKVIFDRESGESRGFGFV 332
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
I+I + E L F +G IV I++ + +S+G+GFVT + D +
Sbjct: 52 IFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMK--RDGRSRGFGFVTYESSDSV 102
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 422 AIVSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
+I++ I+ Q +S+G+GFVT+ N + L
Sbjct: 67 SILARVIMEREQPERSRGFGFVTLENQEDL 96
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 359 IYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNK 466
++ ++L E L +F YG + +++I+ DHQ +
Sbjct: 185 VFGLSLYTTERDLRPVFEKYGPVEAIQIVYDHQAKE 220
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,283,477
Number of Sequences: 59808
Number of extensions: 421871
Number of successful extensions: 935
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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