Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0716
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    28   0.11 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          26   0.35 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.9  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 129 LYEHQYEAERAIQNINGSTPPGFLHPLTVKYANKSNPHKHKNIIILL 269
           L   Q +  + +Q I+   P   L  L   Y  +SN H++KN II++
Sbjct: 29  LLNKQQDVIQLLQKISQPIPNQELQNLGASYDIESNSHQYKNPIIVM 75


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +2

Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKI---IRDHQTNKSKGYGFV 487
           ++IY ++L +  L  W  +GP    VS  +   + D  TN     GF+
Sbjct: 22  VWIYALSLSLPPLFGWGSYGPEAGNVSCSVSWEVHDPVTNSDTYIGFL 69


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 507 NCDGNTSIKRISI 545
           NCDG TS+ RI +
Sbjct: 241 NCDGLTSVFRIQV 253


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 100 ELIILPNCANNPCKPCKVN 44
           E++   NC  NPC     N
Sbjct: 423 EIVTCTNCGPNPCTHTTTN 441


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 100 ELIILPNCANNPCKPCKVN 44
           E++   NC  NPC     N
Sbjct: 409 EIVTCTNCGPNPCTHTTTN 427


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 100 ELIILPNCANNPCKPCKVN 44
           E++   NC  NPC     N
Sbjct: 443 EIVTCTNCGPNPCTHTTTN 461


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -2

Query: 100 ELIILPNCANNPCKPCKVN 44
           E++   NC  NPC     N
Sbjct: 392 EIVTCTNCGPNPCTHTTTN 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,704
Number of Sequences: 438
Number of extensions: 4697
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)