Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0716
(791 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 52 3e-07
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 48 5e-06
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 48 7e-06
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 48 9e-06
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 48 9e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 47 2e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 47 2e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 47 2e-05
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 47 2e-05
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 47 2e-05
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 46 3e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 46 3e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 3e-05
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 45 5e-05
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 45 7e-05
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 44 9e-05
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 44 1e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 44 1e-04
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 44 2e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 43 2e-04
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 43 2e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 43 3e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 43 3e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 42 4e-04
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 42 5e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 42 5e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 42 5e-04
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 42 5e-04
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 42 5e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 42 5e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 42 5e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 42 6e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 42 6e-04
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 42 6e-04
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 42 6e-04
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 42 6e-04
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 42 6e-04
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 41 8e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 41 8e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 41 8e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 41 8e-04
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 41 0.001
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 41 0.001
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 41 0.001
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 41 0.001
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 41 0.001
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 41 0.001
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 41 0.001
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 41 0.001
At5g51300.2 68418.m06360 splicing factor-related contains simila... 40 0.001
At5g51300.1 68418.m06359 splicing factor-related contains simila... 40 0.001
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 40 0.001
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 40 0.001
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 40 0.001
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 40 0.001
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 40 0.001
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 40 0.002
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 40 0.002
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 40 0.002
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 40 0.003
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 40 0.003
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 40 0.003
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 40 0.003
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 40 0.003
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 40 0.003
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 40 0.003
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 39 0.003
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 39 0.003
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 39 0.003
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 39 0.003
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 39 0.003
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 39 0.003
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 39 0.003
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 39 0.003
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 39 0.004
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 39 0.004
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 38 0.006
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 38 0.006
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 38 0.006
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 38 0.006
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 38 0.006
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 38 0.006
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 38 0.006
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 38 0.006
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 38 0.008
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 38 0.008
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 38 0.008
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 38 0.008
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.008
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 38 0.010
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 38 0.010
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 38 0.010
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 38 0.010
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 38 0.010
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 38 0.010
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.010
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 38 0.010
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 38 0.010
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 38 0.010
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 38 0.010
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 38 0.010
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 38 0.010
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 37 0.013
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 37 0.013
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 37 0.013
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 37 0.018
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 37 0.018
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 37 0.018
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 37 0.018
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 36 0.031
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 36 0.031
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 36 0.031
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.031
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.031
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 36 0.041
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.041
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 36 0.041
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 36 0.041
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 36 0.041
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 36 0.041
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 36 0.041
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 36 0.041
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 35 0.054
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 35 0.071
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 35 0.071
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 35 0.071
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 35 0.071
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 35 0.071
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 34 0.094
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 34 0.094
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 34 0.094
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 34 0.094
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 34 0.12
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 34 0.12
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 34 0.12
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 33 0.16
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.16
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 33 0.16
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 33 0.22
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 33 0.22
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 33 0.22
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 33 0.22
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 33 0.22
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 33 0.22
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 33 0.29
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 33 0.29
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 32 0.38
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 32 0.38
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 32 0.38
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 32 0.38
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 32 0.50
At3g22080.1 68416.m02786 meprin and TRAF homology domain-contain... 31 0.66
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 31 0.88
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p... 31 1.2
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 30 1.5
At3g01150.1 68416.m00019 polypyrimidine tract-binding protein, p... 30 1.5
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 30 2.0
At4g10610.1 68417.m01735 RNA-binding protein, putative 30 2.0
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 30 2.0
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 30 2.0
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 29 2.7
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 29 2.7
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 29 2.7
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 29 2.7
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 29 2.7
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 29 3.5
At5g42920.2 68418.m05233 expressed protein 29 4.7
At5g42920.1 68418.m05232 expressed protein 29 4.7
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 29 4.7
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 4.7
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 4.7
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 4.7
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 28 6.2
At2g47310.1 68415.m05906 flowering time control protein-related ... 28 6.2
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 28 8.2
At5g42320.1 68418.m05150 zinc carboxypeptidase family protein co... 28 8.2
At5g38970.3 68418.m04714 cytochrome P450, putative similar to Cy... 28 8.2
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 28 8.2
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 28 8.2
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 52.4 bits (120), Expect = 3e-07
Identities = 20/53 (37%), Positives = 36/53 (67%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
+Y+ N+ +V+ L QLF +G +V +++ D +T +S+G+GFVTM + D+L
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDEL 298
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/52 (32%), Positives = 33/52 (63%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
+++ N+A +V L LF G + ++I + +T++S+G+GFVTM + D+
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +2
Query: 338 PNT-WS-IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
PN WS +Y+ N++ + E L ++FG YG IVS K++ H+ +SKG+GFV N ++
Sbjct: 299 PNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVM-CHENGRSKGFGFVCFSNCEE 356
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +2
Query: 296 QWINHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKG 475
++IN + ++ ++Y+ N+ V + L LF YG + SV ++RD +S+G
Sbjct: 185 KFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRG 243
Query: 476 YGFVTMRN 499
+GFV N
Sbjct: 244 FGFVNFCN 251
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/46 (32%), Positives = 31/46 (67%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++Y+ N+ + L ++F P+G+I+S K++ ++ +SKG+GFV
Sbjct: 113 NLYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN--GQSKGFGFV 156
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 317 AVGEH-NSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
A+G H +S S+Y+ +++ +V E L F +VSV + R+ T KS Y ++
Sbjct: 10 ALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYI 67
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNI 173
N+Y+ NL +T LH LF+Q+G + + + + G FV + + A++A++++
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 174 NG 179
G
Sbjct: 263 CG 264
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 48.0 bits (109), Expect = 7e-06
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
+++ +A E + TL Q F YG I+ +I D T +SKGYGFVT R+ + R
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 47.6 bits (108), Expect = 9e-06
Identities = 18/53 (33%), Positives = 35/53 (66%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
IY+ N+ +V+ L +LF +G +V +++ D +T +S+G+GFV M N +++
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEV 261
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +2
Query: 320 VGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
VG P +++ N+ +V+ L LF G + ++I + T++S+G+GFVTM
Sbjct: 104 VGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMST 163
Query: 500 YDQ 508
++
Sbjct: 164 VEE 166
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Frame = +3
Query: 3 EADWNLYICNLPNELTLQGLHGLFAQFGRIINSRIAA--------GIAFVLYEHQYEAER 158
+A + +Y+ NLP ++ L LF++ G+++++R+ + G FV ++ E
Sbjct: 204 DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNV 263
Query: 159 AIQNINGSTPPG 194
AI ++G G
Sbjct: 264 AIAALDGQNLEG 275
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 47.6 bits (108), Expect = 9e-06
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
+Y+ N+ + L Q+FG G +V V+I+ D T++S+G+GFVTM + ++ +
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAK 171
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/54 (22%), Positives = 28/54 (51%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
+Y N+ + L FG ++ K+I + T +S+G+GF++ + + ++
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQ 274
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRI--------AAGIAFVLYEHQYEAERAIQNI 173
LY+ NLP +T L +F + G +++ +I + G FV EA+ A+Q
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 174 NGS 182
N S
Sbjct: 178 NSS 180
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +2
Query: 302 INHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYG 481
++H G + +T+S+ + NI L+ LF YG +V V I RD +T S+G+
Sbjct: 1 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60
Query: 482 FVTMRNYDQ 508
FV + D+
Sbjct: 61 FVRYKYKDE 69
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +2
Query: 302 INHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYG 481
++H G + +T+S+ + NI L+ LF YG +V V I RD +T S+G+
Sbjct: 1 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60
Query: 482 FVTMRNYDQ 508
FV + D+
Sbjct: 61 FVRYKYKDE 69
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
+++ ++ + +L QLF P+G I ++IRD +T + KG+GF+T + D R
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDAR 62
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +2
Query: 344 TWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
T I++ I V E L F YG +V ++IRDH+TN+S+G+GFV
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFV 155
Score = 35.1 bits (77), Expect = 0.054
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 323 GEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
G+ SP I+I + + + FG YG I I+RD T + +G+GF+T
Sbjct: 13 GDGASPG--KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFIT 66
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +2
Query: 344 TWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
T I++ I V E L F YG +V ++IRDH+TN+S+G+GFV
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFV 155
Score = 35.1 bits (77), Expect = 0.054
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 323 GEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
G+ SP I+I + + + FG YG I I+RD T + +G+GF+T
Sbjct: 13 GDGASPG--KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFIT 66
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
+++ +A E + TL + F YG I+ +I D T +SKGYGFVT R+ + R
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +2
Query: 338 PNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTM 493
P +Y+ NI + L +F P+G ++SV++ R+ QT +S+G G+VTM
Sbjct: 105 PRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTM 156
Score = 33.5 bits (73), Expect = 0.16
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRI--------AAGIAFVLYEHQYEAERAIQNI 173
LY+CN+P + L +F FG +I+ + + G +V A+ AI ++
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 174 NGSTPPGFLHPLTVKYANKSNPHKHKNIIIL 266
+G+ G + V+Y+ NP +N +L
Sbjct: 170 DGTEVGG--REMRVRYSVDMNPGTRRNPEVL 198
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/52 (21%), Positives = 29/52 (55%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
+Y+ N+ + L F +G IVS +++ D +T +++ + F++ + ++
Sbjct: 214 VYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE 265
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 3 EADWNLYICNLPNELTLQGLHGLFAQFGRIINSRI 107
E+ +Y+ NLP GL F++FG I+++R+
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRV 243
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 46.0 bits (104), Expect = 3e-05
Identities = 17/54 (31%), Positives = 35/54 (64%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
+Y+ N++ V+++ L LF G +V ++I D + +SKG+GFVT+ + +++
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 314 SAVGEHNSPNT-WSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
SA E NS + +++ N++ V+ L QLF G + V++I D T +S+G+GFVT
Sbjct: 87 SAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVT 146
Query: 491 M 493
M
Sbjct: 147 M 147
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 46.0 bits (104), Expect = 3e-05
Identities = 17/54 (31%), Positives = 35/54 (64%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
+Y+ N++ V+++ L LF G +V ++I D + +SKG+GFVT+ + +++
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 314 SAVGEHNSPNT-WSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
SA E NS + +++ N++ V+ L QLF G + V++I D T +S+G+GFVT
Sbjct: 87 SAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVT 146
Query: 491 M 493
M
Sbjct: 147 M 147
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/67 (28%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 302 INHISAVGEHNSPNT-WSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGY 478
+N A G+ ++ ++I++ +++ EV + TL+Q F + + +++ D +T +S+G+
Sbjct: 128 VNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGF 187
Query: 479 GFVTMRN 499
GFV+ RN
Sbjct: 188 GFVSFRN 194
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +2
Query: 326 EHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
E+NS T ++Y+ N+A EV +L L + F GA +I + + + KG+GFV +
Sbjct: 259 ENNSQFT-TVYVGNLAPEVTQLDLHRYFHALGA----GVIEEVRVQRDKGFGFVRYNTHP 313
Query: 506 Q 508
+
Sbjct: 314 E 314
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +2
Query: 323 GEHNSPNT--WSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMR 496
G +N+ +T I++ +A E + T+ + F +G IV +I D T +SKGYGFVT +
Sbjct: 12 GNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFK 71
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 44.8 bits (101), Expect = 7e-05
Identities = 17/46 (36%), Positives = 30/46 (65%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
+Y+ N++ V+++ L LF G +V ++I D + +SKG+GFVT
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVT 251
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
+++ N+ V+ L QLF G + V++I D T +S+G+GFVTM + ++
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEV 145
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRIAA-----GIAFVLYEHQYEAERAIQNI 173
LYICNLP +T + + LF ++ I RI G AFV+YE Y+A++A+ ++
Sbjct: 22 LYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDIYDAKKAVDHL 78
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = +2
Query: 341 NTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
N + ++ +A +E ++ + F +G + KII D +T +SKG+ FVT ++ D +R
Sbjct: 42 NEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMR 99
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
I++ I+ +E L + F YG +V KII D +T +S+G+ FVT + ++
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEE 87
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRIAA-----GIAFVLYEHQYEAERAIQNING 179
LY+ NLP +T + ++ +F ++G I RI G AFV+YE Y+A+ A+ +++G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG 79
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN-YD 505
+Y+ N+ + ++ +FG YGAI ++I D T KG FV + YD
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKAT---KGTAFVVYEDIYD 69
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/46 (36%), Positives = 31/46 (67%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
++I +A ++E +L + F YG +V ++I D +T +S+G+GFVT
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +2
Query: 332 NSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
N ++Y+ N+A + L FG YG I S +++D + KSKG+GFV N D
Sbjct: 24 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENAD 80
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++Y+ N+ + + L ++F P+G + S K++RD SKG GFV
Sbjct: 133 NLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFV 177
Score = 35.1 bits (77), Expect = 0.054
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNI 173
N+Y+ NL T L F ++G+I ++ + + G FV +E+ +A RA++++
Sbjct: 30 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESL 89
Query: 174 NG 179
NG
Sbjct: 90 NG 91
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +2
Query: 341 NTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
N+ +Y+ I ++ E L +F YG IV V +IRD T KSKG+ F+
Sbjct: 34 NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFL 82
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +2
Query: 320 VGEHNSPNTW--SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTM 493
+G+H++ ++Y+ + ++ E LW+LF G +V+V + +D TN + YGF+
Sbjct: 14 LGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEY 73
Query: 494 RNYDQLRWQYK 526
R+ + + K
Sbjct: 74 RSEEDADYAIK 84
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVS-VKIIRDHQTNKSKGYGFVTMRNYD 505
+++I N+ +V+E L+ F +G I S KI+RD T S+G+GF++ +++
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFE 165
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
+++ +A E + + F +G I+ II D T KSKGYGFVT R+ D
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSD 69
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
+++ +A E + + F +G I+ II D T KSKGYGFVT R D
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESD 69
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
+++ +A E + + F +G I+ II D T KSKGYGFVT R D
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESD 69
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 332 NSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
N T I++ I V++ + F +G + +I+RDH T +S+G+GFVT + D +
Sbjct: 125 NDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMV 184
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
I++ +A E + FG YG I I++D +T + +G+GFVT
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVT 89
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +2
Query: 347 WSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
+ +Y+ N+A V + L LF G +VS K+ R T+KS G+GFVT + + +
Sbjct: 177 YKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDV 231
Score = 35.9 bits (79), Expect = 0.031
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
+YI NI V L +L +GA+ V+++ D + +S+ +GF TM++ +
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVE 128
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +2
Query: 356 YIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
++ +A ++ L F YG ++ KII D +T +S+G+GFVT ++
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD 58
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +2
Query: 356 YIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
++ +A ++ L F YG ++ KII D +T +S+G+GFVT ++
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD 58
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/67 (25%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +2
Query: 302 INHISAVGEHNSPNT-WSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGY 478
+N A G+ ++ ++I++ +++ EV + L+ F + + +++ D +T +S+G+
Sbjct: 132 VNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGF 191
Query: 479 GFVTMRN 499
GFV+ RN
Sbjct: 192 GFVSFRN 198
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +2
Query: 332 NSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
N+P ++Y+ N++ EV +L L +LF GA +I + + + KG+GFV +D+
Sbjct: 264 NNPQFTTVYVGNLSPEVTQLDLHRLFYTLGA----GVIEEVRVQRDKGFGFVRYNTHDE 318
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
+++IYNI E E+ L F P+G ++S K+ D T SK +GF++
Sbjct: 340 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFIS 386
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI----AAGIA----FVLYEHQYEAERAIQN 170
NL+I N+P E Q L F FG+++++++ A GI+ F+ Y+ Q A+ AI
Sbjct: 340 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 399
Query: 171 ING 179
+NG
Sbjct: 400 MNG 402
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
+++IYNI E E+ L F P+G ++S K+ D T SK +GF++
Sbjct: 331 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFIS 377
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI----AAGIA----FVLYEHQYEAERAIQN 170
NL+I N+P E Q L F FG+++++++ A GI+ F+ Y+ Q A+ AI
Sbjct: 331 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 390
Query: 171 ING 179
+NG
Sbjct: 391 MNG 393
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/52 (30%), Positives = 32/52 (61%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
+Y+ N++ + L + F YG +V ++RD T++S+G+GFVT ++ +
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSE 56
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
++Y+ N++ + + L ++FG +G S I+RD + KSKG+GFV N D
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSD 275
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +2
Query: 344 TWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
T S+Y+ ++ V + L++ F G +VSV++ RD T +S GYG+V
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYV 91
Score = 34.7 bits (76), Expect = 0.071
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIIN-------SRIAAGIAFVLYEHQYEAERAIQNI 173
NLY+ NL +T L FA FG I + S ++ G FV + EA RAI +
Sbjct: 328 NLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEM 387
Query: 174 NGSTPPGFLHPLTVKYANKSNPHK 245
NG PL V A + K
Sbjct: 388 NGKMI--VTKPLYVALAQRKEDRK 409
Score = 34.7 bits (76), Expect = 0.071
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++Y+ N+ V + L + F P+G I S K++RD + S+G GFV
Sbjct: 328 NLYVKNLDESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFV 372
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNI 173
N+Y+ NL L+ + L+ +F +FG + I + G FV +E+ +A RA+ +
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 174 NGST 185
NG T
Sbjct: 285 NGKT 288
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
+++ +A E + T+ + F +G I+ +I D + +SKGYGFVT R + R
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
+++ +A E + T+ + F +G I+ +I D + +SKGYGFVT R + R
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
+++ +A E + T+ + F +G I+ +I D + +SKGYGFVT R + R
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAAR 68
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +2
Query: 344 TWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
T I++ + +EE L F YG I+ +I+ DH T +S+G+GFVT + D +
Sbjct: 156 TRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSV 211
Score = 35.1 bits (77), Expect = 0.054
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +2
Query: 302 INHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYG 481
++H + +SP +++ ++ E T FG +G +V I+ D T +G+G
Sbjct: 53 VDHRHSSSSMSSPG--KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFG 110
Query: 482 FVT 490
FVT
Sbjct: 111 FVT 113
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++I I+ + +E L + FG YG +V I+RD T +++G+GF+
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFI 61
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +2
Query: 323 GEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
G T I++ + + E F +G I V ++ DH T + +G+GF+T
Sbjct: 114 GNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFIT 169
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
S+ + N++ + E L +LF P+GA+ V + D +T S+G+GFV
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFV 259
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
S+Y+ ++ V + L+ F +VSV++ RD TN S GYG+V N D
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTD 98
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNI 173
NLY+ NL + +T + L LFA+FG I + ++ + G FV + EA R + +
Sbjct: 329 NLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEM 388
Query: 174 NGSTPPGFLHPLTVKYANKSNPHKHK 251
NG G PL V A + + K
Sbjct: 389 NGKMVGG--KPLYVALAQRKEERRAK 412
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
++++ N+ V+ TL + F G IVS K+ DH +S+GYGFV D +
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAK 188
Score = 35.5 bits (78), Expect = 0.041
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++Y+ N+ V + L +LF +G I S K++RD + SKG GFV
Sbjct: 329 NLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFV 373
Score = 34.7 bits (76), Expect = 0.071
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
++Y+ N++ + L FG YG+I S ++RD KS+ +GFV N
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFEN 274
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRIAAG-------IAFVLYEHQYEAERAIQNI 173
N+Y+ NL T L F Q+G I ++ + FV +E+ +A RA++ +
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 174 NG 179
NG
Sbjct: 286 NG 287
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +2
Query: 326 EHNSPNTWSIYIYNIALEVEELTLWQLFGP-YGAIVSVKIIRDHQTNKSKGYGFV 487
E+N P+ SI++ ++A +V + L + F Y ++ + K++ D T +SKGYGFV
Sbjct: 193 ENNGPDL-SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFV 246
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 425 IVSVKIIRDHQTNKSKGYGFVTMRNYD 505
IVS+K+IR+ S+GYGFV ++D
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHD 157
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +2
Query: 326 EHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKII---RDHQTNKSKGYGFVTMR 496
+ P T ++Y+ N++ +V+E L + FG +G I SVKI+ D + + + GFV+
Sbjct: 172 DDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFM 231
Query: 497 N 499
N
Sbjct: 232 N 232
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
++I +A + L LF YG + +I D T KSKGYGFVT + D
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
++I +A + L LF YG + +I D T KSKGYGFVT + D
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 347 WSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
+ +++ IA E E L Q F YGA++ + ++ T K +G+GFV N
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAN 56
Score = 32.7 bits (71), Expect = 0.29
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Frame = +2
Query: 254 YNNTFTKNTIVRPYQWINHISAVGEHN--SPNTWSIYIYNIALEVEELTLWQLFGPYGAI 427
Y F+ + R Q +N N + T I++ ++ E F +G
Sbjct: 87 YQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRT 146
Query: 428 VSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
V ++ D TN+ +G+GFVT + D +
Sbjct: 147 TDVVVMHDGVTNRPRGFGFVTYDSEDSV 174
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +2
Query: 332 NSPNTWSIYIYNIALEVEELTLWQLF-GPYGAIVSVKIIRDHQTNKSKGYGFV 487
N P+ SI++ ++A +V + L + F G Y ++ K++ D T +SKGYGFV
Sbjct: 209 NGPDL-SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFV 260
Score = 34.3 bits (75), Expect = 0.094
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++++ ++ ++E L F + SVK+IR+ QT +S+GYGFV
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFV 165
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
+++ +A E +++L F +G IV +I D + +SKGYGFVT
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVT 54
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
+++ +A E +++L F +G IV +I D + +SKGYGFVT
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVT 54
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +2
Query: 302 INHISAVGEHNSPNT-WSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGY 478
+N A G+ ++ ++I++ +++ EV + L+ F Y +++ D +T +S+G+
Sbjct: 123 VNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGF 182
Query: 479 GFVTMRN 499
GFV+ RN
Sbjct: 183 GFVSFRN 189
Score = 31.1 bits (67), Expect = 0.88
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +2
Query: 326 EHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
E+N+ T ++Y+ N+A EV ++ L + F GA +I + + + KG+GFV
Sbjct: 254 ENNAQYT-TVYVGNLAPEVSQVDLHRHFHSLGA----GVIEEVRVQRDKGFGFV 302
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++YI + +E+ L LF +G IV K+I+D T SKGYGFV
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFV 526
Score = 39.1 bits (87), Expect = 0.003
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI--------AAGIAFVLYEHQYEAERAIQN 170
NLYI LP L GL LF+ FG I+ +++ + G FV Y A A+Q
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540
Query: 171 INGSTPPGFLHPLTVKYANKSNP 239
+NG G L V+ A KS P
Sbjct: 541 MNGYRFEG--RTLAVRIAGKSPP 561
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++YI + +E+ L LF +G IV K+I+D T SKGYGFV
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFV 526
Score = 39.1 bits (87), Expect = 0.003
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI--------AAGIAFVLYEHQYEAERAIQN 170
NLYI LP L GL LF+ FG I+ +++ + G FV Y A A+Q
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540
Query: 171 INGSTPPGFLHPLTVKYANKSNP 239
+NG G L V+ A KS P
Sbjct: 541 MNGYRFEG--RTLAVRIAGKSPP 561
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +2
Query: 314 SAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
S G N+ I++ +A V E + F +G I V ++ DH+T + +G+GF++
Sbjct: 22 SLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFIS 80
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +2
Query: 314 SAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
S G N+ I++ +A V E + F +G I V ++ DH+T + +G+GF++
Sbjct: 95 SLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFIS 153
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +2
Query: 314 SAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
S G N+ I++ +A V E + F +G I V ++ DH+T + +G+GF++
Sbjct: 95 SLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFIS 153
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
S+Y+ + ++ E + ++F YG++++VKI+ D + K YGFVT N
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSN 56
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+I+I N+ ++ L++ F +G I+S K+ D T +SKGYGFV
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFV 181
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +2
Query: 335 SPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+P ++Y+ N+ E+ E L + FG +G I S ++RD Q+ S+ +GFV
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFV 274
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +2
Query: 320 VGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
V + PN+ S+Y ++ +V E L+ LF +VSV++ RD Q +S GY ++ N
Sbjct: 41 VADQTHPNS-SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSN 98
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINS---RIAAG----IAFVLYEHQYEAERAIQNI 173
N+Y+ NLP E+ L F +FG I ++ R +G FV +E A A++ +
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 174 NG 179
NG
Sbjct: 290 NG 291
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 332 NSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
N P I + N+ E L + F +G I VK+I+D +SKGY F+ + D
Sbjct: 35 NYPLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
+++ +A + + ++ F YG I+ II D T +SKGYGFVT ++
Sbjct: 19 VFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKD 67
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 341 NTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
N + ++ ++ EV + L + F + K+IRD +T K+KGYGFV+ N
Sbjct: 135 NDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLN 187
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +2
Query: 356 YIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
++ +A + L + F +G ++ KII D ++ +S+G+GFVT ++ +R
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +2
Query: 356 YIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
++ +A + L + F +G ++ KII D ++ +S+G+GFVT ++ +R
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +2
Query: 356 YIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
++ +A + L + F +G ++ KII D ++ +S+G+GFVT ++ +R
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 39.5 bits (88), Expect = 0.003
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +2
Query: 356 YIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
++ +A + L + F +G ++ KII D ++ +S+G+GFVT ++ +R
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Frame = +2
Query: 332 NSPNTWSIYIYNIALEVEELTLWQLFGP-YGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
N P+ S+++ +++ +V ++ L + F Y ++ S K++ D T +SKGYGFV + ++
Sbjct: 198 NGPDL-SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENE 256
Query: 509 LRWQYKH*TDIYCT-VNLSL*VSKRKRDNVDTKDFKNDTVII 631
YC+ + + ++ KR + + + VI+
Sbjct: 257 RSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVIL 298
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/57 (29%), Positives = 34/57 (59%)
Frame = +2
Query: 317 AVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
A+ + + ++++ ++ ++E L F G + SVK+IR+ T++S+GYGFV
Sbjct: 98 AIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFV 154
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRI--AAGIAFVLYEHQYEAERAIQNINGS 182
+++ + ++ + L F+QFG +++ +I G FV + + AE AI+++NG+
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGT 379
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 311 ISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
+S H++ T I++ N+ L + F +G +V ++ + +SKGYGF+T
Sbjct: 1 MSQTNNHDTRVT-KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFIT 59
Query: 491 MRNY 502
R+Y
Sbjct: 60 FRDY 63
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIIN-------SRIAAGIAFVLYEHQYEAERAIQNI 173
NLY+ NL +++ L FA+FG+I++ +R+ G AFV +++ +A RA + +
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 174 NGS 182
NG+
Sbjct: 262 NGT 264
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRIAA-------GIAFVLYEHQYEAERAIQNI 173
N+++ NLP +T L +F +FG I++ ++A G FV +E + A AIQ +
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 174 NGS 182
N +
Sbjct: 173 NST 175
Score = 34.3 bits (75), Expect = 0.094
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
++++ N+ V L +F +G IVS K+ + KS+GYGFV D
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQED 163
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +2
Query: 332 NSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGF 484
+SP T S+Y+ ++ V E L+ F + ++ SV++ +D + +S YG+
Sbjct: 19 SSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGY 69
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI-------AAGIAFVLYEHQYEAERAIQNI 173
N+Y+ N+ +T + L F+Q G I ++++ + G FV + EA A++
Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364
Query: 174 NGSTPPGFLHPLTVKYANKSNPHK 245
+G G PL V A K K
Sbjct: 365 HGQMFHG--KPLYVAIAQKKEDRK 386
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLF-GPYGAIVSVKIIRDHQTNKSKGYGFV 487
+I++ ++A EV + L F YG++ K++ D T +SKGYGFV
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFV 201
Score = 35.1 bits (77), Expect = 0.054
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +2
Query: 308 HISAVGEHN---SPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGY 478
H +G N + + S++I ++ ++E + +F G S K+IR+ T +S+GY
Sbjct: 44 HQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGY 103
Query: 479 GFV 487
GF+
Sbjct: 104 GFI 106
Score = 31.5 bits (68), Expect = 0.66
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 272 KNTI-VRPYQWINHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKI 442
KN + ++P + N A N PN +I++ + V + L +FG +G ++ VKI
Sbjct: 234 KNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI 291
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
IY+ + + L F +G I+ V ++ D +T++S+GYGFVT ++
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKD 63
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +2
Query: 326 EHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKII---RDHQTNKSKGYGFVTMR 496
+ P T ++Y+ N++ +V+E L + FG +G I SVKI+ + + + + GFV
Sbjct: 180 DDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFM 239
Query: 497 N 499
N
Sbjct: 240 N 240
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2
Query: 305 NHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGF 484
N I V + + P I+++ + + + TL + F YG I K + D + KSKGYGF
Sbjct: 127 NRIREVADED-PVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGF 185
Query: 485 VTMRN 499
+ ++
Sbjct: 186 ILYKS 190
Score = 31.1 bits (67), Expect = 0.88
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 311 ISAVGEH-NSPNTWS-IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGY 478
+SA +H NS +T IY+ N+ E++ L F +G I + D T + KG+
Sbjct: 231 VSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2
Query: 305 NHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGF 484
N I V + + P I+++ + + + TL + F YG I K + D + KSKGYGF
Sbjct: 127 NRIREVADED-PVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGF 185
Query: 485 VTMRN 499
+ ++
Sbjct: 186 ILYKS 190
Score = 31.1 bits (67), Expect = 0.88
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 311 ISAVGEH-NSPNTWS-IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGY 478
+SA +H NS +T IY+ N+ E++ L F +G I + D T + KG+
Sbjct: 231 VSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2
Query: 305 NHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGF 484
N I V + + P I+++ + + + TL + F YG I K + D + KSKGYGF
Sbjct: 127 NRIREVADED-PVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGF 185
Query: 485 VTMRN 499
+ ++
Sbjct: 186 ILYKS 190
Score = 31.1 bits (67), Expect = 0.88
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 311 ISAVGEH-NSPNTWS-IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGY 478
+SA +H NS +T IY+ N+ E++ L F +G I + D T + KG+
Sbjct: 231 VSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +2
Query: 326 EHNSPNTWSIYIYNIALEVEELTLWQLFGP-YGAIVSVKIIRDHQTNKSKGYGFV 487
E+N P+ SI++ +++ +V + L + F Y ++ + K++ D T +SKGYGFV
Sbjct: 191 ENNGPDL-SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFV 244
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 425 IVSVKIIRDHQTNKSKGYGFVTMRNYD 505
IVSVK+IR+ S+GYGFV ++D
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHD 155
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +2
Query: 326 EHNSPNTWSIYIYNIALEVEELTLWQLFGP-YGAIVSVKIIRDHQTNKSKGYGFV 487
E+N P+ SI++ +++ +V + L + F Y ++ + K++ D T +SKGYGFV
Sbjct: 191 ENNGPDL-SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFV 244
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 425 IVSVKIIRDHQTNKSKGYGFVTMRNYD 505
IVSVK+IR+ S+GYGFV ++D
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHD 155
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/70 (30%), Positives = 39/70 (55%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAERAIQNINGSTPPG 194
++Y+ N + L LF++FGR+ + +G AFV +E + +AE AI+ + +T
Sbjct: 3 HVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGY 62
Query: 195 FLHPLTVKYA 224
L+V++A
Sbjct: 63 GRRKLSVEWA 72
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +2
Query: 332 NSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
N+P ++Y+ N++ EV +L L +LF GA +I + + + KG+GFV +D+
Sbjct: 268 NNPQFTTVYVGNLSPEVTQLDLHRLFYTLGA----GVIEEVRVQRDKGFGFVRYNTHDE 322
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +2
Query: 302 INHISAVGEHNSPNT-WSIYIYNIALEVEELTLWQLFGPYGAIVS----VKIIRDHQTNK 466
+N A G+ ++ ++I++ +++ EV + L+ F + + S +++ D +T +
Sbjct: 132 VNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGR 191
Query: 467 SKGYGFVTMRN 499
S+G+GFV+ RN
Sbjct: 192 SRGFGFVSFRN 202
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGP-YGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLRWQYK 526
SI++ ++A +V + L + F Y ++ K++ D T +SKGYGFV +
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 527 H*TDIYCT 550
+YC+
Sbjct: 177 EMNGLYCS 184
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +2
Query: 323 GEHNSPNTW----SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
G ++ P T +++I ++ V+E L F G +VSVK+IR+ T + +GYGF+
Sbjct: 12 GSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFI 70
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 338 PNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
P +Y+ N+ + EL L Q+F +G + V++ D +T + KG+GF+
Sbjct: 262 PADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFI 311
Score = 35.5 bits (78), Expect = 0.041
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+++ Y + L+ E +++ F G + V++I D + +SKG G++
Sbjct: 169 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYI 214
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +2
Query: 308 HISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
H + E + I++ ++ E L ++FG G + V+I+++ QT KSKG F+
Sbjct: 201 HHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFL 260
Query: 488 TMRNYDQLR 514
+Q +
Sbjct: 261 RFATVEQAK 269
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
+I+I + E + L PYG + V++ R+ + + K +GFVT ++
Sbjct: 392 TIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHE 443
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMR 496
I++Y + E TL +F YG I ++ D T K+KG+GFV +
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFK 153
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMR 496
I++Y + E TL +F YG I ++ D T K+KG+GFV +
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFK 153
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 347 WSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
++ ++ + + +E L +F +G ++ KII D T KS+ +GFVT
Sbjct: 7 YTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVT 54
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +2
Query: 299 WINHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLF-GPYGAIVSVKIIRDHQTNKSKG 475
W + S +SP+ ++I++ ++A +V + L + F Y ++ K++ D T ++KG
Sbjct: 140 WASLSSGDKRDDSPD-YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKG 198
Query: 476 YGFV 487
YGFV
Sbjct: 199 YGFV 202
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNY 502
+++I ++ ++E L+ F G +VS K+IR+ QT + +GYGF+ ++
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASH 113
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 314 SAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKI 442
+ V N PN ++++ + V + L +F YG IV VKI
Sbjct: 250 AGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI 292
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +2
Query: 299 WINHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLF-GPYGAIVSVKIIRDHQTNKSKG 475
W + S +SP+ ++I++ ++A +V + L + F Y ++ K++ D T ++KG
Sbjct: 140 WASLSSGDKRDDSPD-YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKG 198
Query: 476 YGFV 487
YGFV
Sbjct: 199 YGFV 202
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNY 502
+++I ++ ++E L+ F G +VS K+IR+ QT + +GYGF+ ++
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASH 113
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 314 SAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKI 442
+ V N PN ++++ + V + L +F YG IV VKI
Sbjct: 250 AGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI 292
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 329 HNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
H + IY+ + L F +G IV K++ D T +SKG+GFVT R +
Sbjct: 3 HPNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVE 61
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Frame = +3
Query: 3 EADWNLYICNLPNELTLQGLHGLFAQFGRIINSRI--------AAGIAFVLYEHQYEAER 158
+ + +Y+ LP +GL F +FG I+ +++ + G FV + A R
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATR 65
Query: 159 AIQNIN 176
A +N N
Sbjct: 66 ACENPN 71
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
S+ + N++ + L +LF P+GA+ + D +T+ S+G+GFV+
Sbjct: 175 SVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVS 221
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 37.9 bits (84), Expect = 0.008
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI----AAGIA----FVLYEHQYEAERAIQN 170
NL+I N+P E Q L F FG ++++++ A G++ FV Y+ Q A+ AI
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409
Query: 171 INGSTPPGFLHPLTVKY-ANKSNPHKHKNII 260
+NG G + +K +N P + ++I
Sbjct: 410 MNGRHLGGKKLKVQLKRDSNNGQPSSNPSLI 440
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 338 PNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
P+ +Y+ I + E L G G + V+I+R+ + KGY FVT R+ D
Sbjct: 89 PHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKD 144
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRII 95
LYI NLP ++T + L LF G+I+
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKIL 295
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = +2
Query: 338 PNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
P+ ++Y+ N+ E+ + L + FG YG I S +++D Q+ S+ +GFV
Sbjct: 222 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFV 270
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++I I+ + +E L F YG +V I+RD T +++G+GF+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFI 52
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +2
Query: 308 HISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
H+ + T I++ + + E F +G I V ++ DH T + +G+GF+
Sbjct: 97 HLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
Query: 488 TMRNYD 505
T + D
Sbjct: 157 TFDSDD 162
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++I I+ + +E L F YG +V I+RD T +++G+GF+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFI 52
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +2
Query: 308 HISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
H+ + T I++ + + E F +G I V ++ DH T + +G+GF+
Sbjct: 97 HLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
Query: 488 TMRNYD 505
T + D
Sbjct: 157 TFDSDD 162
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++I I+ + +E L F YG +V I+RD T +++G+GF+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFI 52
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +2
Query: 308 HISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
H+ + T I++ + + E F +G I V ++ DH T + +G+GF+
Sbjct: 97 HLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
Query: 488 TMRNYD 505
T + D
Sbjct: 157 TFDSDD 162
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 18 LYICNLPNELT-LQGLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAERAIQNINGS 182
L++ N + T + L F +G+I+N RI AF+ YE Q +A RA+ N S
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSS 153
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 18 LYICNLPNELT-LQGLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAERAIQNINGS 182
L++ N + T + L F +G+I+N RI AF+ YE Q +A RA+ N S
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSS 153
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
S+++ + V E L ++F +G + +VKII + +T +S GYG+V
Sbjct: 59 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYV 104
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
S+++ + V E L ++F +G + +VKII + +T +S GYG+V
Sbjct: 78 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYV 123
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
++I ++ ++ +L F +G +V K+I D +T +S+G+GFV +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND 85
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
++I ++ ++ +L F +G +V K+I D +T +S+G+GFV +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND 85
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLRWQYK 526
++++ + E E + + F YG I V ++ D TNK KGY F+ + ++ YK
Sbjct: 139 TLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYK 197
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 344 TWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
T ++I ++ E TL F +G +V VKII D + +SKGY F+
Sbjct: 281 TKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFL 328
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 37.5 bits (83), Expect = 0.010
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRII--------NSRIAAGIAFVLYEHQYEAERAIQNI 173
LY+ NL LT +H LF+ FG++ ++R + G+AFVLY + +A +A +++
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 174 NGSTPPGFLHPLTVKYA 224
+ G LTV A
Sbjct: 119 DAKILNG--RKLTVSIA 133
Score = 36.3 bits (80), Expect = 0.023
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 335 SPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+P+ ++Y+ N+ + + LF +G + V +++D T +S+G FV
Sbjct: 53 APSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFV 103
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +2
Query: 311 ISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
++AV + + ++Y+ +A EV E L F P+G I VK D K + +GFVT
Sbjct: 1 MAAVQQQQAMQKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVT 60
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
++I ++ E L + F G +V +I+ D +++SKG+GFVT + D+
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADE 87
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 18 LYICNLPNELT-LQGLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAERAIQNINGS 182
L++ N + T + L F +G+I+N RI AF+ YE Q +A RA+ N S
Sbjct: 58 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNS 113
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 18 LYICNLPNELT-LQGLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAERAIQNINGS 182
L++ N + T + L F +G+I+N RI AF+ YE Q +A RA+ N S
Sbjct: 99 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNS 154
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNY 502
S++I ++ ++E L +FG G + K+IR+ Q S+GYGF+ N+
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNH 131
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLF-GPYGAIVSVKIIRDHQTNKSKGYGFV 487
++++ ++A +V + L + F Y ++ K++ D T +SKGYGFV
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFV 220
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 272 KNTIVRPYQWINHISAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKI 442
K ++P + N GE + NT +I++ + V E L +FG +G +V VKI
Sbjct: 254 KPLTMQPASYQNTQGNSGESDPTNT-TIFVGAVDQSVTEDDLKSVFGQFGELVHVKI 309
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+++ Y IAL E +++ F G + V+II D + +S+G G+V
Sbjct: 183 TVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYV 228
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
S+Y+ ++ V E L F G + V ++ D T +S+G+GF++M++
Sbjct: 46 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKS 95
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
S+Y+ ++ V E L F G + V ++ D T +S+G+GF++M++
Sbjct: 76 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKS 125
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 35.9 bits (79), Expect = 0.031
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +2
Query: 335 SPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
SP++ ++I ++ V+E +L F +G + V+I D + +S+G+GFV
Sbjct: 38 SPSS-KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFV 87
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 35.9 bits (79), Expect = 0.031
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
++++ I+ E TL Q F YG ++ V +I D + KG+ +VT + ++
Sbjct: 22 TLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEE 74
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRIAA--------GIAFVLYEHQYEAERAIQNI 173
L++ + T + L F+Q+G+++ + G A+V + + EAE+A+ +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 174 NGSTPPGFLHPLTVKYANKSNP 239
N G + L A K NP
Sbjct: 83 NAQLVDGRVVILDTTKAAKHNP 104
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 35.9 bits (79), Expect = 0.031
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSR-------IAAGIAFVLYEHQYEAERAIQNI 173
NLY+ NL + + L LF++FG I + + I+ G+ FV + EA +A+ +
Sbjct: 224 NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKM 283
Query: 174 NGSTPPGFLHPLTVKYANKSNPHK 245
NG P+ V A HK
Sbjct: 284 NGKMVGN--KPIYVSLAQCKEQHK 305
Score = 34.3 bits (75), Expect = 0.094
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++Y+ N+ + L +LFG +G I S +++D + KS+ +GFV
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFV 164
Score = 34.3 bits (75), Expect = 0.094
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
++Y+ N+ V+ L +LF +G I S K++ H SKG GFV
Sbjct: 224 NLYVKNLDDSVDNTKLEELFSEFGTITSCKVM-VHSNGISKGVGFV 268
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.9 bits (79), Expect = 0.031
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMR 496
+++ +++ V E L ++FG +G ++ V+I D N +G+G+V +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFK 147
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.9 bits (79), Expect = 0.031
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMR 496
+++ +++ V E L ++FG +G ++ V+I D N +G+G+V +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFK 147
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 35.5 bits (78), Expect = 0.041
Identities = 14/46 (30%), Positives = 29/46 (63%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
I++ ++ EV + L + F +G I+ +I+ + T +S+G+GF+T
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFIT 54
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 35.5 bits (78), Expect = 0.041
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 344 TWSIYIYNIALEVEELTLWQLF-GPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
T+++++ N+A E L + F G +VS ++I +S GYGFV+ + Q
Sbjct: 188 TFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQ 243
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 35.5 bits (78), Expect = 0.041
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
+++ ++ ++ +L Q F +G + +I D +T +S+G+GFV+
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVS 82
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 35.5 bits (78), Expect = 0.041
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
+++ ++ ++ +L Q F +G + +I D +T +S+G+GFV+
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVS 82
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 35.5 bits (78), Expect = 0.041
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 305 NHISAVGEHNSPN-TWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYG 481
N S G P T I++ + V E F +G V ++ DH T + +G+G
Sbjct: 93 NSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFG 152
Query: 482 FVT 490
F+T
Sbjct: 153 FIT 155
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 35.5 bits (78), Expect = 0.041
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 305 NHISAVGEHNSPN-TWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYG 481
N S G P T I++ + V E F +G V ++ DH T + +G+G
Sbjct: 93 NSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFG 152
Query: 482 FVT 490
F+T
Sbjct: 153 FIT 155
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 35.5 bits (78), Expect = 0.041
Identities = 17/59 (28%), Positives = 35/59 (59%)
Frame = +2
Query: 332 NSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
NS ++++N+ + + +LFG G + +V+IIR + K++G+ FVTM + ++
Sbjct: 90 NSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIR-QKDGKNRGFAFVTMASGEE 147
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 108 AAGIAFVLYEHQYEAERAIQNINGSTPPGFLHPLTVKYANKS 233
++G FV + + EAE AI +NG G P+T+K++ +S
Sbjct: 235 SSGYGFVSFATREEAENAITKLNGKEIMG--RPITLKFSLRS 274
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 35.5 bits (78), Expect = 0.041
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 314 SAVGEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTM 493
SAV + + +Y N+ V+ TL Q+ + V+++ + T +S+G+ FVTM
Sbjct: 74 SAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTM 133
Query: 494 RNYD 505
N +
Sbjct: 134 SNVE 137
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+++ N++ V +L F G +V +++ D T +S+GYGFV
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 35.1 bits (77), Expect = 0.054
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
I++ ++ + L + FG +G IV ++ D ++ S+G+GFVT
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVT 83
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 34.7 bits (76), Expect = 0.071
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 344 TWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
T I++ + + + Q F YG + V I+ D TN+ +G+GFV+ + D
Sbjct: 109 TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSED 162
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+++ I+ E +E L + F YG + ++RD T + +G+GFV
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFV 52
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 34.7 bits (76), Expect = 0.071
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 338 PNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
P+ ++I + +V E L L G I V++++D + SKGY FV + D
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKD 168
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 34.7 bits (76), Expect = 0.071
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRIAAGIAFVLYEHQYEAERAIQNINGSTPPGF 197
+++ N E L LF ++GR+ + +G AFV +E + +AE AI+ ++ + P G+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLD-NFPFGY 62
Query: 198 -LHPLTVKYA 224
L+V++A
Sbjct: 63 EKRRLSVEWA 72
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 34.7 bits (76), Expect = 0.071
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLRWQYK 526
++++ ++ E TL ++ YG I +++++R T S+GYGFV ++ Y+
Sbjct: 65 TLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYE 123
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 34.7 bits (76), Expect = 0.071
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 395 LWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
L F +G +V ++I D + +SKG+GFVT
Sbjct: 50 LQDAFASFGQLVDARVITDRDSGRSKGFGFVT 81
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 34.3 bits (75), Expect = 0.094
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGF 484
++YI N+ V + L+ + G ++ + I RD +T+K KG+ F
Sbjct: 8 TVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAF 52
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 34.3 bits (75), Expect = 0.094
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRIAAG-----IAFVLYEHQYEAERAIQNING 179
++Y+ NLP ++ + +F ++GRI++ + FV +EH +AE AI+ +G
Sbjct: 8 SIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDG 67
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 34.3 bits (75), Expect = 0.094
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
I+++ + + + +L F YG I K + D + +SKGYGF+ ++
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKS 178
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 305 NHISAVGEHNSPNTWS--IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGY 478
N + A +H +P IY+ N++ +++ L + F +G I + D T + KG+
Sbjct: 211 NPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGF 270
Query: 479 GFVTMRNYDQLR 514
R+ + +
Sbjct: 271 ALFVYRSLESAK 282
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 34.3 bits (75), Expect = 0.094
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLRWQY 523
+++ + E+ L +F +G +VS +IRD +T S Y F+ N + Y
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAY 301
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 392 TLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
+L QLF P+ ++I+D QT + KG+GF+T + D
Sbjct: 86 SLRQLFAPFA-----RLIKDQQTQRPKGFGFITFESED 118
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 356 YIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
+I +A + L F YG +V K++ D + +S+G+GF+T
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFIT 54
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMR 496
+I++ + + L F YG I ++ D T + KGYGFV +
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFK 457
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Frame = +3
Query: 3 EADWNLYICNLPNELTLQGLHGLFAQFGRIINSRI--------AAGIAFVLYEHQYEAER 158
E NL++ L T +GL FAQFG + ++++ + G FV Y ++ +
Sbjct: 53 EPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAK 112
Query: 159 AIQNINGSTPPGFL 200
I ++G G++
Sbjct: 113 GIAGMDGKFLDGWV 126
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 338 PNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
P+T ++++ ++ L F +G + K++ D + SKG+GFV
Sbjct: 54 PST-NLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFV 102
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRIA-------AGIAFVLYEHQYEAERAIQNI 173
+LYI NL +++ + L +F+ FG++I S +A G AF+ +E A RA+ ++
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHM 77
Query: 174 NG 179
+G
Sbjct: 78 DG 79
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 33.5 bits (73), Expect = 0.16
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRIAAG--IAFVLYEHQYEAERAIQNINGSTP 188
+L++ NLP+ + + L F +FG + + G AFV + H +A AI+++ G
Sbjct: 24 HLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQGFPL 83
Query: 189 PGFLHPLTVKYA 224
G +PL +++A
Sbjct: 84 SG--NPLRIEFA 93
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/55 (21%), Positives = 30/55 (54%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
++ + ++++ E L+Q+ +G + V++IR+ + S+G+ F+ D R
Sbjct: 299 TVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAAR 353
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRI--INSRIAAGIAFVLYEHQYEAERAIQNINGSTP 188
NL++ +L E T L LF ++G I I + G AF+ Y H EA A + + G+
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGANL 78
Query: 189 PG 194
G
Sbjct: 79 NG 80
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMR 496
+I++ + + L F YG I ++ D T ++KG+GFV +
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFK 212
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRIA--------AGIAFVLYEHQYEAERAIQNI 173
LY+ L T L F QFG +I+ + G AF+ YE + EA +AIQ +
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 174 NG 179
+G
Sbjct: 139 HG 140
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +2
Query: 332 NSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+ P T +Y+ ++ E TL F +G ++ + ++ D N+ KG+ F+
Sbjct: 73 SGPKT-KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFL 123
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
I++ ++ +V E L F YG I +I+ T + +G+GF+T
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFIT 59
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVT 490
I++ ++ +V E L F YG I +I+ T + +G+GF+T
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFIT 59
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYD 505
+YI ++ +E +L F + + +++ + T +S+GYGFV + D
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISED 83
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+++ NIA E + L QLF P+G I S+++ + + + GY FV
Sbjct: 671 LHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKN-IGQYAGYAFV 714
Score = 31.9 bits (69), Expect = 0.50
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRII--------NSRIAAGIAFVLYEHQYEAERAIQNI 173
L++ NLP T + L F+ FG+I ++ + GIA++LY A RA++ +
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 322
Query: 174 NGSTPPG-FLHPLTVKYANKSN 236
+ S+ G LH L K+ S+
Sbjct: 323 DNSSFQGRLLHILPAKHRETSD 344
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 326 EHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTM 493
E +P T ++Y+ ++ V + L F G + S ++ + +T S+G+ FVTM
Sbjct: 66 EVENPGT-TLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTM 120
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIIN--------SRIAAGIAFVLYEHQYEAERAIQNI 173
LY+ L +T + L FA+ G++ + +R++ G AFV +AER I+ +
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 174 NGSTPPG 194
N S G
Sbjct: 134 NQSVLEG 140
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 326 EHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTM 493
E +P T ++Y+ ++ V + L F G + S ++ + +T S+G+ FVTM
Sbjct: 65 EVENPGT-TLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTM 119
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIIN--------SRIAAGIAFVLYEHQYEAERAIQNI 173
LY+ L +T + L FA+ G++ + +R++ G AFV +AER I+ +
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 174 NGSTPPG 194
N S G
Sbjct: 133 NQSVLEG 139
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 32.3 bits (70), Expect = 0.38
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRI-----AAGIAFVLYEHQYEAERAIQNINGS 182
+Y+ NLP ++ + + LF+++G ++ + G AFV +E +A+ AI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 183 TPPGFLHPLTVKYANKSNPHKH 248
G H L V+ A+ H
Sbjct: 69 DFDG--HHLRVELAHGGRRSSH 88
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 32.3 bits (70), Expect = 0.38
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRI-----AAGIAFVLYEHQYEAERAIQNINGS 182
+Y+ NLP ++ + + LF+++G ++ + G AFV +E +A+ AI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 183 TPPGFLHPLTVKYANKSNPHKH 248
G H L V+ A+ H
Sbjct: 69 DFDG--HHLRVELAHGGRRSSH 88
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
+YI I E + F +G + V++ R+ +T KSK +GF+
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFI 106
>At3g22080.1 68416.m02786 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 595
Score = 31.5 bits (68), Expect = 0.66
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Frame = +2
Query: 296 QWINHISAVGEHNSPNTWSIYIY---NIALEVEELTLWQL----FGPYGAIVSVKIIRDH 454
QW + G N+ SIY+Y + L EE ++ P+G+I
Sbjct: 163 QWFLKVHPKGVKARDNSLSIYVYLSESETLNAEEKIYTRVHLRVLDPFGSIHQAGQCNFW 222
Query: 455 QTN--KSKGYGFVTMRNYDQLRWQY 523
+TN K++GYG+ T + D++R +Y
Sbjct: 223 RTNTNKNQGYGWPTFASLDKVREKY 247
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 31.1 bits (67), Expect = 0.88
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
I++ I V E F YG I + + +D+ + + +G GF+T + D +
Sbjct: 93 IFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSV 145
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/54 (18%), Positives = 27/54 (50%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQLR 514
+ + I +++ L +G + +++D T +S+G+G+VT + + +
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAK 58
>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 429
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRIAAGI----AFVLYEHQYEAERAIQNINGST 185
L++ NLP E T + L L FG ++N++ G AF+ +E +A + I S+
Sbjct: 20 LHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYYASSS 79
Query: 186 PPGFLHPLTV--KYANK 230
P + TV +Y+N+
Sbjct: 80 EPAQVRGKTVYLQYSNR 96
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +2
Query: 323 GEHNSPNTWSIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
G +S S+ + N+ + + L + F +G + + + RD+ T +G+GF+
Sbjct: 29 GSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFI 83
>At3g01150.1 68416.m00019 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Sus scrofa} SP|Q29099, {Mus musculus}
SP|P17225; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRIAAGI----AFVLYEHQYEAERAIQNINGST 185
+++ NLP E + L L +FG+I+N++ G AFV + +A + S+
Sbjct: 19 VHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYYASSS 78
Query: 186 PPGFLHPLTVKYANKSNPHKHKN 254
P + TV Y SN H+ N
Sbjct: 79 EPAQIRGKTV-YIQYSNRHEIVN 100
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRIAA-------GIAFVLYEHQYEAERAIQNIN 176
L++ NLP E + + F + G ++ ++ G FV + EAE A+Q N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 177 G 179
G
Sbjct: 189 G 189
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRIAAG------IAFVLYEHQYEAERAIQNING 179
+Y+ ++ ++T + L GLF FG++++ RI AF+ + + A A+ N++G
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTDEVGARTAL-NLSG 210
Query: 180 STPPGFLHPLTV 215
T GF +P+ V
Sbjct: 211 -TMLGF-YPVKV 220
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGF 484
I++ + E+ + +L +G + +++D +T SKGY F
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAF 420
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Frame = +3
Query: 12 WN--LYICNLPNELTLQGLHGLFAQFGRIINSRI-----AAGIAFVLYEHQYEAERAIQN 170
WN +Y+ NLP ++ + LF ++G I++ + G AFV +E +A+ AI
Sbjct: 5 WNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYG 64
Query: 171 ING 179
+G
Sbjct: 65 RDG 67
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRIAAG------IAFVLYEHQYEAERAIQNING 179
+Y+ ++ +T +GL GLF+ G++++ RI AFV + A A+ G
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALS--LG 200
Query: 180 STPPGFLHPLTV 215
T GF +P+ V
Sbjct: 201 GTMLGF-YPVRV 211
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 272 KNTIVRPYQWINHISAVGEHNSP---NTWSIYIYNIALEVEELTLWQLFGPYGAIVSVK 439
+NT++R H S E+ S N ++ I+N+ V L QLFG YG I ++
Sbjct: 242 QNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIR 300
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 272 KNTIVRPYQWINHISAVGEHNSP---NTWSIYIYNIALEVEELTLWQLFGPYGAIVSVK 439
+NT++R H S E+ S N ++ I+N+ V L QLFG YG I ++
Sbjct: 255 QNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIR 313
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +2
Query: 350 SIYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFV 487
S+ + N+ + + L + F +G + + + RD+ T +G+GFV
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFV 82
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIR 448
+++ N+ E+ E L QLF P+G I + ++R
Sbjct: 8 VHVRNVGHEISENDLLQLFQPFGVITKLVMLR 39
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRI 107
+Y+ ++ +T +GL GLF+ G++++ RI
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRI 159
>At5g42920.2 68418.m05233 expressed protein
Length = 819
Score = 28.7 bits (61), Expect = 4.7
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 263 TFTKNTIVRPYQWINHISAV 322
TF +N RPY+W+ H++ +
Sbjct: 417 TFDENRTSRPYKWVQHLAGI 436
>At5g42920.1 68418.m05232 expressed protein
Length = 702
Score = 28.7 bits (61), Expect = 4.7
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2
Query: 263 TFTKNTIVRPYQWINHISAV 322
TF +N RPY+W+ H++ +
Sbjct: 300 TFDENRTSRPYKWVQHLAGI 319
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRII 95
LYI NLP ++T + L LF G+I+
Sbjct: 36 LYIKNLPRDITQERLKALFEHHGKIL 61
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGF 484
I++ + E + +L +G + +++D +T SKGY F
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGF 484
I++ + E + +L +G + +++D +T SKGY F
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGF 484
I++ + E + +L +G + +++D +T SKGY F
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +3
Query: 18 LYICNLPNELTLQGLHGLFAQFGRIINSRIAA-------GIAFVLYEHQYEAERAIQNIN 176
L++ NL + + + G G +++ R+ A G AFV + EA++ ++N N
Sbjct: 129 LFVANLSPQTKILDIFGFCQDVGEVVSVRLIANHEDKPVGCAFVEFLSANEAKKVLENKN 188
Query: 177 G 179
G
Sbjct: 189 G 189
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/52 (21%), Positives = 25/52 (48%)
Frame = +2
Query: 353 IYIYNIALEVEELTLWQLFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQ 508
+Y+ I+ E + Q+F YG + + + +D T + Y F+ + ++
Sbjct: 112 LYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEE 163
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 520 IQALNGYLLHGQPLSVSFKTQK 585
IQA++G++L G+PL F T K
Sbjct: 133 IQAVHGFILDGKPLKACFGTTK 154
>At5g42320.1 68418.m05150 zinc carboxypeptidase family protein
contains Pfam domain, PF00246: Zinc carboxypeptidase
Length = 461
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 72 FAQFGR-IINSRIAAGIAFVLYEHQYEAERAIQNINGSTPPGFLHPLTVKYANKSNPHKH 248
F Q GR +I S +A I +L E Q+ + N NG L L +K NP+
Sbjct: 137 FGQHGRELITSELAFRILSILSEEQF-----LPNKNGGILKNTLDKLVIKMVPIENPNGR 191
Query: 249 KNI 257
K +
Sbjct: 192 KRV 194
>At5g38970.3 68418.m04714 cytochrome P450, putative similar to
Cytochrome P450 85 (SP:Q43147) {Lycopersicon
esculentum};
Length = 419
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 338 PNTWSIYIYNIALEVEELTLWQ---LFGPYGAIVSVKIIRDHQTNKSKGYGFVTMRN 499
P W IY+Y + + L++ +F P+ +VS + H G GFV +RN
Sbjct: 364 PKGWRIYVYTREINYDA-NLYEDPLIFNPWRWMVSPWSHKTHALCLEVGQGFVLVRN 419
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 15 NLYICNLPNELTLQGLHGLFAQFGRIINSRI 107
NL+I N+P E Q L F FG ++++++
Sbjct: 349 NLFIYNIPREFGDQELAAAFQSFGIVLSAKV 379
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 407 FGPYGAIVSVKIIRDHQTNKSKGYGFVTMRNYDQL 511
F YG + I+ D T + +G+GFV+ + D +
Sbjct: 130 FETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSV 164
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,340,706
Number of Sequences: 28952
Number of extensions: 285381
Number of successful extensions: 935
Number of sequences better than 10.0: 183
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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