Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0715
(761 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 29 0.72
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 0.72
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 29 0.72
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 27 2.2
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 27 2.9
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 3.9
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 26 5.1
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.7
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 26 6.7
SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c... 25 8.9
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 29.1 bits (62), Expect = 0.72
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 328 WHVLLVRCSHPCRNSPQRIRDG*QQVNIRYFTGLTATGRSSDNATVCRIV 179
W +LLV + C NS +R+G Q+ R F + ++ A+ C++V
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFNSQCSKLGTNAWASCCQLV 1073
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 29.1 bits (62), Expect = 0.72
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 313 VRCSHPCRNSPQRIRDG*QQVNIRYFTGLTATGRSSDNATVCRIVEFSME 164
VR + R S Q + +N+ Y + L+ATG S + TV I E + E
Sbjct: 74 VRLNRLQRESEQFENSALKDINVEYQSNLSATGESVNTTTVSAINEDTRE 123
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 29.1 bits (62), Expect = 0.72
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 132 PTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTCC*PS 269
P+ T +L ++IL T+ SL + VSP Y +FT PS
Sbjct: 89 PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPS 134
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 642 FGKSNANDIYPVVLTSISSFTEWILQN 722
FG S AN + PV L S SFT +++++
Sbjct: 243 FGNSFANGLPPVFLNSSRSFTSYLVKS 269
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +3
Query: 33 TCVYWRASQAWSKLKYSYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVALS 206
+CV+ + +++ + ++SY S NG + + P L+P S + S + VA+S
Sbjct: 116 SCVWLNSVKSFVEKQFSYSSGTNGILATFLTAIPPNIFILLVPKSFDTSMLNLFVAVS 173
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 624 AHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 517
+H+ + H S+Y R+R PG N QS H
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 606 AFFQNALVGIVSFGKSNANDIYPVVLTSISSFTEWILQNVH*YFLLK 746
AF+ N++VG++ K+ + + +IS FT L+++ LLK
Sbjct: 505 AFYINSMVGLLLLTKNYQERLMDSRIDAISKFTHSYLKSLSEIILLK 551
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 142 LPFNCYLFPWRILRSCIPSHYRWIFP 219
LP + + F W +C P H WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +3
Query: 576 DYDNTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSISSFTEWILQN 722
D + +L + + +SF K D YP + + FT+ ++QN
Sbjct: 102 DLTDVELSDKVIKASYIEDTISFSKPKTVDNYPEYIQHLPGFTKKVVQN 150
>SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +2
Query: 41 LLASIPSLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSR 220
L+ IPS I ++ + + FQ C G V N ++T+ F+ P Y +A
Sbjct: 34 LIHLIPSQSGIIPWIQVESFNFQGCEGAVFGNPKAITTSALFNALLQSP-YLAALANEFN 92
Query: 221 RS 226
RS
Sbjct: 93 RS 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,406,285
Number of Sequences: 5004
Number of extensions: 76575
Number of successful extensions: 213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -