Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0714
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 81 1e-16
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 27 3.8
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.0
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 26 5.0
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 5.0
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 6.7
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 8.8
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 81.4 bits (192), Expect = 1e-16
Identities = 38/71 (53%), Positives = 53/71 (74%)
Frame = +1
Query: 511 QSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRE 690
Q EF+ A+ +F A+ E CSE SSR AM+NASK+AG+MI+K ++ +NR RQA IT E
Sbjct: 230 QPLMEFAFANAIFSAMAEAHCSEMSSRRNAMENASKSAGDMINKFSIQYNRQRQASITNE 289
Query: 691 LIEIISGAAAL 723
LI+I++GA +L
Sbjct: 290 LIDIVTGANSL 300
Score = 47.2 bits (107), Expect = 3e-06
Identities = 26/73 (35%), Positives = 41/73 (56%)
Frame = +2
Query: 299 IGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKL 478
IG P+F +A Q+++ IL ++ ++YNKF S VS+ LYT K+I + L
Sbjct: 160 IGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLYTTKAINESPNL 219
Query: 479 TAYDSLDSDVSNP 517
+AY+ D +V P
Sbjct: 220 SAYEVSD-EVHQP 231
Score = 39.9 bits (89), Expect = 4e-04
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +1
Query: 4 KYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCG 153
K TRA+R ++A+ Y + + ++ A PE+ K L VA +SD+GLCG
Sbjct: 61 KLTRAQRAMEASNKYYRVSDEVFKEAGTKAPEEG-KTLMVACSSDKGLCG 109
Score = 29.5 bits (63), Expect = 0.54
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +3
Query: 156 VHTGVSKVIRNRLSEPGA-ENIKVICVGDKSR-GICRDCTES 275
+H+ +S++IR L +P EN + +G+K R + R C ES
Sbjct: 111 IHSSISRLIRRELHDPKTFENTSLCILGEKVRTQLLRFCPES 152
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -2
Query: 215 VLSTRFAE-TVADHFGYTSVYTPHK-PLSEVIATNNCLGSSSGGVTSALS 72
V+ T+ A+ T+ G + Y P++ P E++ TN + +GG +ALS
Sbjct: 254 VVITQGADATIVAKDGKVTTYKPNRVPSEEIVDTNGAGDAFAGGFIAALS 303
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 264 CTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSF 392
C ++L L +S++ LS + +PL + RDT L+ +F
Sbjct: 172 CETDSALAQLFKSEIYQQLSDFRRDFPLSHALRDTMLIARLNF 214
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 150 RSVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGICRD 263
+ VH + K N+L AE ++VI G + G C++
Sbjct: 182 QEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKE 219
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 5.0
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 344 TAILT--SGYEFGSGK-IIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVSN 514
T LT SG+ FG K II ++ + V + D+ + KK++E A D LD V
Sbjct: 446 TCFLTTESGF-FGHLKSIILSQLPAAV-FKSPDI-VSVKKTLEDARSHLLKDDLDGSVRA 502
Query: 515 PTRSSRWPR 541
S+WPR
Sbjct: 503 LLSLSQWPR 511
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 283 NDVLSVQSLQIPRDLSPTQITLMFSAPGSLRRLRITLDTPVCTLRTN 143
N L L++ ++L P I+L+FS LRR ++ + V T+ N
Sbjct: 174 NRFLESGFLRLSKNLVPGVISLLFSRDDELRRWACSILSDVKTISDN 220
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 332 SQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDV 508
S+ + IL + +FGS KII K +V S L + +I L +L +D+
Sbjct: 2456 SEFSVLILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADI 2514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,136
Number of Sequences: 5004
Number of extensions: 53416
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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