Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0714
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 97 1e-20
07_03_0571 - 19602755-19603831 59 3e-09
07_03_1697 - 28795521-28797328,28797430-28797550 31 0.75
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015... 31 0.75
03_05_0287 + 22759946-22760836 28 7.0
10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397 28 9.2
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 28 9.2
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 97.1 bits (231), Expect = 1e-20
Identities = 45/73 (61%), Positives = 61/73 (83%)
Frame = +1
Query: 508 VQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITR 687
+Q+ TEF + +++ A E ACSE +RM+AMD++S+NAGEM+D+LTLT+NRTRQA IT
Sbjct: 295 LQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITT 354
Query: 688 ELIEIISGAAALD 726
ELIEIISGA+AL+
Sbjct: 355 ELIEIISGASALE 367
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +2
Query: 308 LPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAY 487
L F D + + E+ + ++++NKF SV+S+ + + + + +E S+
Sbjct: 218 LQQKFTDVIAVLADDILKNVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKV 277
Query: 488 DSLDS 502
LDS
Sbjct: 278 GDLDS 282
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 91 PPEDDPKQLFVAMTSDRGLCG 153
P D K + VA+TSD+GLCG
Sbjct: 112 PSVDVKKNVIVAITSDKGLCG 132
>07_03_0571 - 19602755-19603831
Length = 358
Score = 59.3 bits (137), Expect = 3e-09
Identities = 30/64 (46%), Positives = 45/64 (70%)
Frame = +1
Query: 532 LASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISG 711
L S + AL+E SE ++RM+AM +A+ NA E+ L++ +NR RQA IT E++EI++G
Sbjct: 294 LNSQILRALQESLASELAARMSAMSSATDNAIELRKNLSMVYNRQRQAKITGEILEIVAG 353
Query: 712 AAAL 723
A AL
Sbjct: 354 ADAL 357
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 31.5 bits (68), Expect = 0.75
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 469 GALNRLLSVEGQVGLGVRDHRLELVVNDLSGTK-LVSRGEDSSGQLTCVQESRWETSDLI 293
G ++S +G G+ H L +D++ T + SSGQ SR ET DL+
Sbjct: 46 GNSQEVISAPSSLGSGLPPHSKHLGSSDVASTSGSTPEAQISSGQQGADMTSRRETDDLV 105
Query: 292 SNTND 278
S N+
Sbjct: 106 SARNN 110
>05_07_0367 -
29700855-29700920,29701092-29701149,29701446-29701503,
29701800-29701857,29702154-29702211,29702508-29702551,
29702840-29703022,29703192-29703249,29703545-29703602,
29703897-29703954,29704250-29704307,29704956-29705013,
29705310-29705367,29705664-29705721,29706348-29706398,
29706695-29706752,29707049-29707106,29707403-29707459,
29707754-29707810,29708085-29708135,29708431-29708507,
29708785-29708842,29709139-29709195,29709490-29709546,
29709821-29709893,29710167-29710224,29710521-29710578,
29710875-29710931,29711558-29711608,29711904-29711980,
29712258-29712315,29712612-29712669,29712966-29713016,
29713667-29713717,29714014-29714057,29714368-29714444,
29714722-29714779,29715076-29715126,29715423-29715480,
29715776-29715833,29716130-29716187,29716484-29716534,
29716831-29716907,29717185-29717242,29717539-29717589,
29718240-29718316,29718594-29718651,29718947-29719004,
29719301-29719351,29719648-29719705,29723277-29723334,
29723631-29723681,29724331-29724388,29724684-29724741,
29725038-29725088,29725385-29725442,29725738-29725814,
29726092-29726148,29726444-29726501,29726798-29726848,
29727070-29727075
Length = 1209
Score = 31.5 bits (68), Expect = 0.75
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +3
Query: 201 PGAENIKVICVGDKSRGICRDCTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPR-DTSLV 377
P ++ +C G R E+T+ M SD+ T SWP+L + R T
Sbjct: 404 PNQPQLRGLCCGPSD---IRRFAETTAASWPMPSDIRRFAETTAASWPMLWTLRYSTFRR 460
Query: 378 PERSFTTSSSLWSRTPSPT 434
R F T ++ W + P+
Sbjct: 461 NNRCFVTYATSWKTSCGPS 479
>03_05_0287 + 22759946-22760836
Length = 296
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 13 RAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGV 156
R+ DLK P+ G + ERA + ++DP +FV D G+ V
Sbjct: 223 RSVIDLKPVLPWPIGKPKGKERACLAVVDEDPDVIFVGTEEDDGVFAV 270
>10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397
Length = 469
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +2
Query: 317 TFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSL 496
TF+DA A + + G +++Y + S + A +D+P+ + + ++ +KL ++
Sbjct: 174 TFVDADD--EAAVRAAVRPGETRVVYVETMSNPTLAVADIPMLARVAHDAGAKLVVDNTF 231
Query: 497 DSDVSNPTR 523
V +P R
Sbjct: 232 TPMVVSPAR 240
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = +3
Query: 159 HTGVS--KVIRNRLSEPGAENIKVICVGDKSRGICRDCTESTSLVLLMRSDVSHLLSWTQ 332
H G++ K RN+ + P E I V R +D + R+ SHL W Q
Sbjct: 281 HQGITQLKFQRNKRTPPNFEIILVDVAHSAIRDDPKDQLALQACAQARRAPWSHLC-WQQ 339
Query: 333 VSWPLLSSP 359
V WP P
Sbjct: 340 VPWPARQRP 348
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,309,022
Number of Sequences: 37544
Number of extensions: 388607
Number of successful extensions: 1236
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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