Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0714
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 98 6e-21
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 66 3e-11
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 59 3e-09
At2g31480.1 68415.m03845 expressed protein contains Pfam profile... 34 0.12
At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1) ide... 33 0.15
At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1) ide... 33 0.15
At1g12150.1 68414.m01407 expressed protein contains Pfam profile... 30 1.9
At5g18860.1 68418.m02241 inosine-uridine preferring nucleoside h... 29 3.3
At4g18570.1 68417.m02749 proline-rich family protein common fami... 29 3.3
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 29 3.3
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 29 3.3
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 29 3.3
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 29 3.3
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate... 28 5.8
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 28 5.8
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 28 5.8
At4g01380.1 68417.m00178 plastocyanin-like domain-containing pro... 28 7.7
At2g14010.1 68415.m01557 hypothetical protein and genefinder 28 7.7
At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase (I... 28 7.7
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 97.9 bits (233), Expect = 6e-21
Identities = 45/73 (61%), Positives = 61/73 (83%)
Frame = +1
Query: 508 VQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITR 687
+Q+ EF + ++F A+ E ACSE +RM+AMD++S+NAGEM+D+LTLT+NRTRQA IT
Sbjct: 250 LQNLAEFQFSCVMFNAVLENACSEMGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITT 309
Query: 688 ELIEIISGAAALD 726
ELIEIISGA+AL+
Sbjct: 310 ELIEIISGASALE 322
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +2
Query: 278 IISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKS 457
I+ E+ + P + S LA IL + EF + +I+YNKF SVV++ + + + +
Sbjct: 163 IVLSVTELNKNPLNYAQVSVLADDILKN-VEFDALRIVYNKFHSVVAFLPTVSTVLSPEI 221
Query: 458 IESASKL 478
IE S++
Sbjct: 222 IEKESEI 228
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 65.7 bits (153), Expect = 3e-11
Identities = 34/64 (53%), Positives = 44/64 (68%)
Frame = +1
Query: 532 LASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISG 711
L S + AL+E SE +SRM AM NA+ NA E+ LT+ +NR RQA IT EL+EI++G
Sbjct: 320 LNSQILRALQESLASELASRMNAMSNATDNAVELKKNLTMAYNRARQAKITGELLEIVAG 379
Query: 712 AAAL 723
A AL
Sbjct: 380 AEAL 383
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/63 (46%), Positives = 44/63 (69%)
Frame = +1
Query: 532 LASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISG 711
L S + AL+E SE ++RM+AM +AS NA ++ L++ +NR RQA IT E++EI++G
Sbjct: 309 LNSQILRALQESLASELAARMSAMSSASDNASDLKKSLSMVYNRKRQAKITGEILEIVAG 368
Query: 712 AAA 720
A A
Sbjct: 369 ANA 371
>At2g31480.1 68415.m03845 expressed protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 472
Score = 33.9 bits (74), Expect = 0.12
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Frame = +3
Query: 150 RSVHTGVS-KVIRNRLSEPGAENIKVICVGDK-SRGICRDCTESTSLVLLMRSDVSHLLS 323
R+ GVS + R ++ E G + +KV C D S + DC TSL+ R VS S
Sbjct: 71 RTKSAGVSPQPRREKIDESGKQFMKVRCFDDSDSIWLSSDCASPTSLLEERRLSVSFHFS 130
Query: 324 WTQ--VSWPLLSSPRDTSLVPERSFTTSS 404
+ VSW LSS ++SL + T+S+
Sbjct: 131 VDEKIVSW--LSSVANSSLSLNQESTSSN 157
>At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1)
identical to holocarboxylase synthetase 1 (hcs1)
[Arabidopsis thaliana] GI:19698365
Length = 367
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 153 SVHTGVSKVIRNRLSEPGAENIKV-ICVGDKSRGICRDCTESTSLVLLMRSDVSHLLSWT 329
SV T V+K ++N+ S +N KV + + +++ + +D S +L L M S ++H
Sbjct: 54 SVETEVAKGLKNKNSLKLPDNTKVSLILESEAKNLVKDDDNSFNLSLFMNSIITHRFGRF 113
Query: 330 QVSWPLLSSPRD 365
+ P LSS D
Sbjct: 114 LIWSPRLSSTHD 125
>At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1)
identical to holocarboxylase synthetase 1 (hcs1)
[Arabidopsis thaliana] GI:19698365
Length = 367
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 153 SVHTGVSKVIRNRLSEPGAENIKV-ICVGDKSRGICRDCTESTSLVLLMRSDVSHLLSWT 329
SV T V+K ++N+ S +N KV + + +++ + +D S +L L M S ++H
Sbjct: 54 SVETEVAKGLKNKNSLKLPDNTKVSLILESEAKNLVKDDDNSFNLSLFMNSIITHRFGRF 113
Query: 330 QVSWPLLSSPRD 365
+ P LSS D
Sbjct: 114 LIWSPRLSSTHD 125
>At1g12150.1 68414.m01407 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 548
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +1
Query: 487 RLSGQRRVQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMID---KLTLTF 657
RLS + T+ L F +K+ + +S+R A+D+ SK M D KL T
Sbjct: 53 RLSSESVCDKETQLMLVHKEFMKIKQKLDNAESTRSRALDDLSKAKKTMEDLSNKLE-TV 111
Query: 658 NRTRQAVI-TRELIE 699
N+++Q+ I T+E ++
Sbjct: 112 NKSKQSAIDTKETVQ 126
>At5g18860.1 68418.m02241 inosine-uridine preferring nucleoside
hydrolase family protein contains Pfam profile PF01156:
Inosine-uridine preferring nucleoside hydrolase
Length = 890
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 207 AENIKVICVGDKSRG--ICRDCTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVP 380
AE+IKVI GD+SR I D + +L R D L+S ++ L + ++++
Sbjct: 820 AEHIKVIAEGDESRDGKILIDKLRGKQIKILERVD---LISISESFASRLDDKKQSAVI- 875
Query: 381 ERSFTTSSSLWSRTPS 428
SF +WS PS
Sbjct: 876 -GSFEEQKKIWSTPPS 890
>At4g18570.1 68417.m02749 proline-rich family protein common family
members: At3g25690, At4g04980, At5g61090 [Arabidopsis
thaliana]
Length = 642
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 395 NKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVSNPTRSSRWPR 541
N KS+ S +D +Y K IES S+ + + L S T SR PR
Sbjct: 233 NTNKSISSSGDADGDIYRKDEIESYSRSSNSEELTESSSLSTVRSRVPR 281
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -1
Query: 699 LDELPGDDSLTGPVEREGQ 643
LDELPG DSLT P +GQ
Sbjct: 329 LDELPGLDSLTSPGTSDGQ 347
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -1
Query: 699 LDELPGDDSLTGPVEREGQ 643
LDELPG DSLT P +GQ
Sbjct: 329 LDELPGLDSLTSPGTSDGQ 347
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +2
Query: 323 LDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDS 502
+D QL TAI G S +I +NK S+++ + +D + + + L ++L S
Sbjct: 626 MDTIQLLTAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSS 685
Query: 503 DVSNPTRSS 529
+ S P +S
Sbjct: 686 ESSKPAINS 694
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +2
Query: 323 LDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDS 502
+D QL TAI G S +I +NK S+++ + +D + + + L ++L S
Sbjct: 626 MDTIQLLTAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSS 685
Query: 503 DVSNPTRSS 529
+ S P +S
Sbjct: 686 ESSKPAINS 694
>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
receptor kinase 1 (BAK1) / somatic embryogenesis
receptor-like kinase 3 (SERK3) identical to SP|Q94F62
BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
1 precursor (EC 2.7.1.37) (BRI1-associated receptor
kinase 1) (Somatic embryogenesis receptor-like kinase 3)
{Arabidopsis thaliana}; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain;
identical to cDNA somatic embryogenesis receptor-like
kinase 3 (SERK3) GI:14573458
Length = 615
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 73 ERAEVTPPEDDPKQLFVAMTSDRGLCGVYTLVYPK 177
ER E PP D PK+ +A+ S RGL ++ PK
Sbjct: 377 ERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPK 411
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = +2
Query: 323 LDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDS 502
+DA QL TAI G S +I +NK S+++ + ++ + + + L ++++ S
Sbjct: 626 MDAVQLLTAIDGDGGLQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISS 685
Query: 503 DVSNPTRSS 529
+ S P +S
Sbjct: 686 ESSKPAINS 694
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/69 (26%), Positives = 36/69 (52%)
Frame = +2
Query: 323 LDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDS 502
+DA QL TAI G S +I +NK S+++ + ++ + + + L ++++ S
Sbjct: 626 MDAVQLLTAIDGDGGLQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISS 685
Query: 503 DVSNPTRSS 529
+ S P +S
Sbjct: 686 ESSKPAINS 694
>At4g01380.1 68417.m00178 plastocyanin-like domain-containing
protein
Length = 210
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 316 YFLGRKSAGHCYPHLGIRV 372
YF+ K+ GHCY L +RV
Sbjct: 152 YFISSKTPGHCYAGLKLRV 170
>At2g14010.1 68415.m01557 hypothetical protein and genefinder
Length = 833
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 171 SKVIRNRLSEPGAENIKVICVGDKSRGICRDCTESTSLVLLMRSDVSHL 317
S V+RN S+PG+ +V+ DK + + R + ++S + DVS +
Sbjct: 608 SSVMRNA-SDPGSPPTEVVARDDKLKPVTRISSSTSSRTVTFGDDVSRI 655
>At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase
(IGPS) nearly identical to SP|P49572
Length = 402
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 463 LNRLLSVEGQVGLGVRDHRLELVVNDLSGTKLVSRGE 353
+ R+L +EG +G+ + LE D+S TK + GE
Sbjct: 304 MGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGE 340
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,949,133
Number of Sequences: 28952
Number of extensions: 297505
Number of successful extensions: 1003
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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