Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0713
         (427 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15840.1 68417.m02409 expressed protein                             30   0.57 
At5g07790.1 68418.m00892 expressed protein                             29   1.00 
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   4.0  
At1g68430.1 68414.m07817 expressed protein                             27   4.0  
At4g16141.1 68417.m02446 expressed protein contains 1 predicted ...    27   5.3  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    27   5.3  

>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 171 ISGSRARFQLSGNSGRKHSRCCTSILRKLVAGSIVS 278
           +SGS   FQ S NS     R CTS++ K   GS+V+
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDK-TEGSVVA 149


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 102 SSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKLVAGSIVSQ 281
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+ + L+  + +S 
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSLSKNLLWFADISS 469

Query: 282 LTA 290
             A
Sbjct: 470 SVA 472


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 81  KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 179
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At1g68430.1 68414.m07817 expressed protein
          Length = 146

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 212 RQEAQPLLHKHTTEISGRQ 268
           R+E QPL+H H  +++GR+
Sbjct: 53  RREQQPLIHHHHKDVAGRK 71


>At4g16141.1 68417.m02446 expressed protein contains 1 predicted
           transmembrane domain; contains a partial Pfam PF00320:
           GATA zinc finger profile
          Length = 226

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 376 KTEKVRSWSDVENG*CLASPHGVGATMAAAVNCDT 272
           K E     SDV+NG C +S  G G T    V+C T
Sbjct: 11  KLESAGDSSDVDNGNCSSSGSG-GDTKKTCVDCGT 44


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 175 LMESTDPQCHILQHRRPRLPLMQLEAPCS----FNFCSLRAIRRYKSYYVD*G 29
           L++ +DP CH+       LP +     C+     ++CS     R+K   +D G
Sbjct: 30  LLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVG 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,665,885
Number of Sequences: 28952
Number of extensions: 161755
Number of successful extensions: 384
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)