Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0711
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)                   30   1.1  
SB_3972| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)                 29   3.4  
SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              27   7.8  

>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
          Length = 1024

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -2

Query: 383 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGL---DFSGSNRNTSG 255
           DN  GV G+ DD   DNG     +DD+NG+G+   D  G N N +G
Sbjct: 124 DNGVGV-GNYDD---DNGVGVGNYDDDNGVGVGNYDGDGGNNNGNG 165


>SB_3972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -2

Query: 383 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRN 264
           DN  G   SND+G  +NG+     DDNNG G    G++ N
Sbjct: 125 DNNNGAC-SNDNGNDNNGSYHYGNDDNNGAGSYEDGNDDN 163



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 383 DNRGGVDGSNDDGLRDNGA--LFSLFDDNNGLGLDFSGSNRNTSGT 252
           DN G   GSND+   +NGA       DDNNG G + +  + N +G+
Sbjct: 17  DNNG--TGSNDNNDDNNGASSYDDNDDDNNGAGSNDNNDDNNGAGS 60


>SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -2

Query: 383 DNRGGVDGSNDDGLRDNGAL--FSLFDDNNGL-GLDFSGSNRNTSG 255
           DN  GV   +DDG    G+       D+NNG+   D+ GS  N  G
Sbjct: 148 DNNNGVSSDDDDGSGSGGSSDDGGSGDNNNGVSSSDYGGSGDNDDG 193


>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
          Length = 1450

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 356 NDDGLRDNGALFSLFDDNNG 297
           NDDG  D G++F   DD+NG
Sbjct: 894 NDDGGLDGGSVFDAVDDDNG 913


>SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = -2

Query: 383 DNRGGVDGSNDDGLRDNGALFSLFD----DNNGLGLDFSGSN 270
           D+ GG DGS+DD + DNG+   + D    DN+G G D  G +
Sbjct: 259 DDDGGDDGSDDD-VGDNGSDDGIDDVDSGDNDGDGSDGGGDD 299


>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 1269

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 383 DNRGGVDGSNDDGLRDNGALFSLFDDNNGL-GLDFSGSNRN 264
           DNRG     +    RD G  +   +D N   G ++ G+NRN
Sbjct: 63  DNRGNRASQDSGNRRDRGQTYHSREDRNDYRGDNYRGNNRN 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,304,763
Number of Sequences: 59808
Number of extensions: 127168
Number of successful extensions: 568
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)