Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0711
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62130.1 68414.m07010 AAA-type ATPase family protein contains...    29   2.1  
At3g18660.1 68416.m02370 glycogenin glucosyltransferase (glycoge...    28   3.6  
At5g06830.1 68418.m00772 expressed protein contains Pfam profile...    27   8.4  
At3g44370.1 68416.m04767 expressed protein weak similarity to At...    27   8.4  

>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 1025

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 34  LIAVASARVFEPISVGPALVDTYEPIDTEPAYVDIPIP 147
           ++ V +A+ FE +  GPAL+D  + +D      D  IP
Sbjct: 375 ILGVMTAKEFESLMNGPALIDRGKSLDLSSGQGDSSIP 412


>At3g18660.1 68416.m02370 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-1 from
           Homo sapiens [SP|P46976], Oryctolagus cuniculus
           [SP|P13280]
          Length = 655

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 87  CRSNGNWFKDTGRSH 43
           CR  GNW +D GR H
Sbjct: 218 CRKEGNWSRDVGRLH 232


>At5g06830.1 68418.m00772 expressed protein contains Pfam profile:
           PF05600 protein of unknown function (DUF773)
          Length = 549

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 344 LRDNGALFSLFDDNNGLGLDFSGSNRNTSGT 252
           +R+N    S+F D+ GL  D   S+ N +GT
Sbjct: 237 IRENPPSLSVFGDSEGLDADNIQSSENANGT 267


>At3g44370.1 68416.m04767 expressed protein weak similarity to
           AtOXA1 [Arabidopsis thaliana] GI:6624207
          Length = 338

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -2

Query: 383 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGS 273
           D+  GV GSND GL  + ++ SL   +NG GL+F  S
Sbjct: 60  DSIAGV-GSNDHGLEFDDSIASL--GSNGHGLEFGDS 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,481,352
Number of Sequences: 28952
Number of extensions: 81092
Number of successful extensions: 238
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)