Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0710
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr 1|||...    54   1e-08
SPAC31A2.13c |sft1||SNARE Sft1|Schizosaccharomyces pombe|chr 1||...    32   0.062
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    29   0.58 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   4.1  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    25   7.1  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   9.4  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   9.4  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.4  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   9.4  

>SPAC23C4.13 |bet1||SNARE Bet1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 22/65 (33%), Positives = 39/65 (60%)
 Frame = +1

Query: 274 DTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGKTMGRV 453
           D++ENEN+    +L+GK+ SLK +++ +G E+    KL+  ++D  D +   L  TM R+
Sbjct: 28  DSLENENDERISKLTGKVKSLKELTMNIGTEITSSTKLMESMNDSFDSTKSLLSGTMTRL 87

Query: 454 LRLGK 468
             + K
Sbjct: 88  KNVSK 92


>SPAC31A2.13c |sft1||SNARE Sft1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 91

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +1

Query: 280 IENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLD 402
           + ++NER  E LSG++SSLK ++ ++ +   D  ++ R  +
Sbjct: 1   MNDQNERRLETLSGQVSSLKNVTYDIYSRANDYTRIDRATE 41


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +1

Query: 274 DTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGKTMGRV 453
           DT++ E ER++E L       ++I     N + D+E  +  L + +  ++  L +   RV
Sbjct: 365 DTVKREKERLSEHLKSLQEQYEHIQSVYKNVLLDRESYIMRLGNKISENNELLNE--NRV 422

Query: 454 LR 459
           L+
Sbjct: 423 LK 424


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = +3

Query: 51  HILLQIDKNKQYFIVNRRQVDPKLNKRLTKDVINQD 158
           H+L+Q+ K   + ++ R+  D +  K++ KD++ ++
Sbjct: 843 HVLMQLRKAANHALLFRKFYDDEKLKQMAKDIMQEE 878


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 470 PLPSLKTLPMVFPRKPELLSTSSSN-PRKSFSWSLTSLPNSMEMYL 336
           P P    LP+  P   ++L+ +S   P+ SFSW+L   P    ++L
Sbjct: 28  PYPPAPQLPI--PAVVDILTKASQALPQISFSWTLIDQPPDGSLFL 71


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 373 DQEKLLRGLDDDVDRSSGFLGKTMGRV 453
           D  ++   L+  VDRSS F GK+ GR+
Sbjct: 212 DMGRVYYFLETLVDRSSTFSGKSTGRI 238


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +1

Query: 271  EDTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLL 390
            ++  E EN+RM EEL+G +  L+ ++  +    ++ ++ L
Sbjct: 989  QEKSEVENQRMKEELAGPLKILQEMARRIAKVSKESKQEL 1028


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 452 TLPMVFPRKPELLSTSSSNPRKSFSWSLTSLPNS 351
           TL  VFP      STSSS+   S S S  S P++
Sbjct: 40  TLSTVFPSLYRRASTSSSSSSSSISTSHDSQPST 73


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 464 PSLKTLPMVFPRKPELLSTSSSNPR---KSFSWSLTSLPNS 351
           P+  T+P  F   P + ++++ +PR   KS S +  S PNS
Sbjct: 138 PNSPTVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPNS 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,628
Number of Sequences: 5004
Number of extensions: 45269
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)