Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0710
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1607 - 28201729-28201818,28201913-28201972,28202040-282020...    40   0.002
02_04_0072 + 19463801-19464166,19464608-19464701,19464805-194649...    31   0.79 
12_02_0432 + 19008499-19008978,19010830-19011411                       29   3.2  
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776     28   5.6  
06_01_1112 - 9157776-9158149,9158248-9161158                           28   7.4  
09_01_0161 + 2401945-2402218,2402469-2402563,2402936-2403070,240...    27   9.7  
07_03_1617 - 28169177-28169400,28169508-28169763,28170308-281705...    27   9.7  
01_06_0842 - 32365240-32365615,32365772-32366127                       27   9.7  

>08_02_1607 -
           28201729-28201818,28201913-28201972,28202040-28202096,
           28203526-28203670,28204318-28204331
          Length = 121

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/56 (30%), Positives = 35/56 (62%)
 Frame = +1

Query: 283 ENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGKTMGR 450
           E+EN++  + L  ++S LK ++ ++  EV +  ++L  + +D+D S GFL  T+ +
Sbjct: 34  EHENDQAMDSLHDRVSVLKRLTGDIHEEVENHNRMLDRMGNDMDASRGFLSGTVDK 89


>02_04_0072 +
           19463801-19464166,19464608-19464701,19464805-19464926,
           19465033-19465130,19465461-19465560
          Length = 259

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 307 EELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVD 414
           ++LSG +  LK ++ ++G+E+  Q K L  L  DVD
Sbjct: 205 DDLSGVLGQLKGMACDMGSELDRQNKALDDLQGDVD 240


>12_02_0432 + 19008499-19008978,19010830-19011411
          Length = 353

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/41 (26%), Positives = 26/41 (63%)
 Frame = +1

Query: 289 ENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDV 411
           +N++  E+L+G++S +  I  ++       +KLL GL++++
Sbjct: 37  QNKKECEQLAGRVSMIDEILSQMQESDETMQKLLTGLENEL 77


>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
          Length = 429

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 464 PSLKTLPMVFPRK--PELLSTSSSNPRKSFSWSLT 366
           P L + P   P    P L  +S+ +PR+ F+W LT
Sbjct: 366 PPLSSAPKQHPESEAPPLAPSSAPSPREEFAWPLT 400


>06_01_1112 - 9157776-9158149,9158248-9161158
          Length = 1094

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 114 PKLNKRLTKDVINQDLIIIITLVSCC 191
           PK N+ + K ++   +II++  V+CC
Sbjct: 736 PKRNRHILKYILLPGIIIVVAAVTCC 761


>09_01_0161 +
           2401945-2402218,2402469-2402563,2402936-2403070,
           2403176-2403865
          Length = 397

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 286 NENERMAEELSGKISSL-KYISIELGNEVRDQEKLLRGLDDDV 411
           N   R   E   + + L +Y+S ++      QEK L GLDD++
Sbjct: 271 NRGNRTVTEYLHEFNRLARYVSEDVCTNAEKQEKFLAGLDDEL 313


>07_03_1617 -
           28169177-28169400,28169508-28169763,28170308-28170556,
           28170680-28170810,28170902-28171157
          Length = 371

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 66  IDKNKQYFIVNRRQVDPKLNKRLTKDVINQDLIIIITLVS 185
           +D    YF + R+Q+D  L K   K+ + +  I  IT+ S
Sbjct: 135 MDLQVDYFNITRKQLDDLLGKAKAKEFLKKKAIFSITVGS 174


>01_06_0842 - 32365240-32365615,32365772-32366127
          Length = 243

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 268 TEDTIENENERMAEELSGKISSLKYISIELGNEVRDQE--KLLRGLDDDVDRSS 423
           T D +EN   R A EL G ISS    +  L     D +  ++ RG  DDV  S+
Sbjct: 58  TFDAMENALFRKATELHGAISSTMEETKALVEAAADDDPTEIARGSGDDVHTSA 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,901,921
Number of Sequences: 37544
Number of extensions: 264859
Number of successful extensions: 715
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)