Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0710
(647 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_6220| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0089) 31 0.61
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_1959| Best HMM Match : Spectrin (HMM E-Value=0.0062) 29 3.3
SB_52336| Best HMM Match : bZIP_2 (HMM E-Value=8.6) 29 4.3
SB_24168| Best HMM Match : bZIP_2 (HMM E-Value=8.6) 29 4.3
SB_18430| Best HMM Match : bZIP_2 (HMM E-Value=8.6) 29 4.3
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 28 5.7
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 28 7.5
SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_1089| Best HMM Match : AbfB (HMM E-Value=0.034) 27 9.9
>SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = +1
Query: 274 DTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDV 411
D+++ + +++ EEL K + + +++G +D+EKL R D ++
Sbjct: 63 DSLQGDPKKLEEELESKTDYISKLELQIGQLEKDKEKLQRQKDKEL 108
>SB_6220| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0089)
Length = 374
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = +1
Query: 271 EDTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDV 411
E T++ E ER+ E+L+ K S++ + +EL E+ + E+ L G +++
Sbjct: 116 ESTLQGEKERLKEQLAQKDSAINKLGVEL-KELHEIEQKLDGKAEEL 161
>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3306
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 286 NENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGKTMGRVLRLG 465
N+NE + E+ IS+ + E+ +RD+ + L + +R LG RV+++
Sbjct: 1063 NDNEEVISEVKSSISNARSSVDEVSVRLRDRRRRLETALTEKERVYDTLGNFEKRVVKVD 1122
Query: 466 KGNH 477
K H
Sbjct: 1123 KKLH 1126
>SB_1959| Best HMM Match : Spectrin (HMM E-Value=0.0062)
Length = 356
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 286 NENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGKTMGRVLRLG 465
N+NE + E+ IS+ + E+ +RD+ + L + +R LG RV+++
Sbjct: 163 NDNEEVISEVKSSISNARSSVDEVSVRLRDRRRRLETALTEKERVYDTLGNFEKRVVKVD 222
Query: 466 KGNH 477
K H
Sbjct: 223 KKLH 226
>SB_52336| Best HMM Match : bZIP_2 (HMM E-Value=8.6)
Length = 210
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1
Query: 373 DQEKLLRGLDDDVDRSSGFLGKTMGRVLRLGKG 471
D+ LL D D D S GKT+ RV LGKG
Sbjct: 24 DETTLLIPFDPDDDEHSEQRGKTLIRVRNLGKG 56
>SB_24168| Best HMM Match : bZIP_2 (HMM E-Value=8.6)
Length = 210
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1
Query: 373 DQEKLLRGLDDDVDRSSGFLGKTMGRVLRLGKG 471
D+ LL D D D S GKT+ RV LGKG
Sbjct: 24 DETTLLIPFDPDDDEHSEQRGKTLIRVRNLGKG 56
>SB_18430| Best HMM Match : bZIP_2 (HMM E-Value=8.6)
Length = 210
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1
Query: 373 DQEKLLRGLDDDVDRSSGFLGKTMGRVLRLGKG 471
D+ LL D D D S GKT+ RV LGKG
Sbjct: 24 DETTLLIPFDPDDDEHSEQRGKTLIRVRNLGKG 56
>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1126
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 473 FPLPSLKTLPMVFPRKP-ELLSTSSSNPRKSFSWSLTSLPNSMEMYLSEDILPL 315
FP P + VF +K ELL ++ +SF W L + + S D +PL
Sbjct: 3 FPKPDKEPFGYVFHKKASELLEEFKTSVDESFKWLNEILAEAKSQFGSSDSIPL 56
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 274 DTIENENERMAEELSGKISSLKYISIELGNEVRDQEKL 387
+ +EN+NE M EL+ + +S+E + DQ+KL
Sbjct: 2195 ENLENDNEMMKNELNSLRDEHERVSLEFRDMKFDQQKL 2232
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 437 FPRKPELLSTSSSNPRKSFSWSLTSLPNS 351
F ++P + SNP KSF+WS LP+S
Sbjct: 339 FTKQPNRKTPKPSNPLKSFNWS--KLPDS 365
>SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +1
Query: 268 TEDTIENENERMAEELSGKISSLKYISIELGNEVRDQEKLLRGLDDDVDRSSGFLGKTMG 447
TE+ I N + E+ S ++SSL+ + L ++RD E + L++++ ++ TM
Sbjct: 815 TENEISNLRNMLNEKTS-ELSSLRLENGNLEQKMRDAEMKIHELNNNI-KNEALYQSTMA 872
Query: 448 RVLRLGKG 471
R G+G
Sbjct: 873 RKDTAGQG 880
>SB_1089| Best HMM Match : AbfB (HMM E-Value=0.034)
Length = 472
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 467 LPSLKTLPMVFPRKPELLSTSSSN--PRKSFSWSLTSLPNSMEMYLSEDILP 318
LP T + +P++ S S++ P KS S+TSL M +S ++LP
Sbjct: 417 LPGKSTRMSITSLRPDMHSGMSTSLLPAKSTRMSITSLRPDMHSGMSSNLLP 468
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,671,301
Number of Sequences: 59808
Number of extensions: 318080
Number of successful extensions: 790
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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