Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0708
(703 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 162 7e-39
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 156 4e-37
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 154 2e-36
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 143 3e-33
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 133 3e-30
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 124 3e-27
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 124 3e-27
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 121 1e-26
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 120 5e-26
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 118 1e-25
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 113 5e-24
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 89 7e-17
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 84 4e-15
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 79 1e-13
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 75 1e-12
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 72 1e-11
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 71 4e-11
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 66 1e-09
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 64 3e-09
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 60 5e-08
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 57 4e-07
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 57 5e-07
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 56 1e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 55 2e-06
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 54 3e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 54 3e-06
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 54 4e-06
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 50 6e-05
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 48 2e-04
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 47 5e-04
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 45 0.002
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 40 0.045
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 40 0.059
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 36 0.96
UniRef50_Q3W3I5 Cluster: Putative uncharacterized protein; n=1; ... 36 1.3
UniRef50_Q0LG54 Cluster: Putative uncharacterized protein precur... 36 1.3
UniRef50_Q6AQX9 Cluster: Putative uncharacterized protein; n=1; ... 35 1.7
UniRef50_Q9AN20 Cluster: ID622; n=1; Bradyrhizobium japonicum|Re... 34 2.9
UniRef50_UPI000050F8A4 Cluster: COG4585: Signal transduction his... 33 5.1
UniRef50_A1K510 Cluster: Conserved hypothetical membrane protein... 33 6.8
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 9.0
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 162 bits (394), Expect = 7e-39
Identities = 75/84 (89%), Positives = 78/84 (92%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
ARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV
Sbjct: 2 ARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAG 252
KIV QRL+KVDGKVRTDPTYPAG
Sbjct: 62 TKIVMQRLVKVDGKVRTDPTYPAG 85
Score = 153 bits (372), Expect = 3e-36
Identities = 78/147 (53%), Positives = 91/147 (61%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRT
Sbjct: 87 MDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
IRYPDPLI NDS+Q+DIA+ KI D G G P
Sbjct: 147 IRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFD 206
Query: 615 LCTSRTPRDTPSATRLNNVFIIGKGTK 695
+ + + ATRL NVFIIGKG K
Sbjct: 207 IVHIKDSQGHVFATRLTNVFIIGKGNK 233
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 156 bits (379), Expect = 4e-37
Identities = 76/147 (51%), Positives = 92/147 (62%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RT
Sbjct: 87 MDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDART 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
IRYPDPLIKVND+IQ+D+ T KI D G G P
Sbjct: 147 IRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFD 206
Query: 615 LCTSRTPRDTPSATRLNNVFIIGKGTK 695
+ + ATRL+N+F+IGKG K
Sbjct: 207 VVHVKDANGNSFATRLSNIFVIGKGNK 233
Score = 155 bits (377), Expect = 8e-37
Identities = 71/84 (84%), Positives = 76/84 (90%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAG 252
KI QR IK+DGKVRTD TYPAG
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPAG 85
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 154 bits (373), Expect = 2e-36
Identities = 70/84 (83%), Positives = 75/84 (89%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAG 252
KI QR IK+DGKVRTD TYP G
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPTG 85
Score = 94.7 bits (225), Expect(2) = 5e-31
Identities = 47/114 (41%), Positives = 62/114 (54%)
Frame = +3
Query: 354 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGT 533
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI D
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 534 CV*SREAVTWGAWAPSCPARDIPAPSTLCTSRTPRDTPSATRLNNVFIIGKGTK 695
G P + + ATRL+N+F+IGKG K
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNK 265
Score = 84.2 bits (199), Expect = 3e-15
Identities = 32/51 (62%), Positives = 43/51 (84%)
Frame = +2
Query: 509 FIKFESGNLCMITGSRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFGNEV 661
FIKF++ N+CM+TG NLGR+G I +RERHPGSFD+VH+KDSTG++F +
Sbjct: 204 FIKFDTSNMCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRL 254
Score = 62.9 bits (146), Expect(2) = 5e-31
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 356
MDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 87 MDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 143 bits (347), Expect = 3e-33
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
ARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV
Sbjct: 2 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAG 252
+ I+ QR I+VDGKVRTD TYPAG
Sbjct: 62 ISILMQRHIQVDGKVRTDKTYPAG 85
Score = 132 bits (318), Expect = 1e-29
Identities = 71/147 (48%), Positives = 85/147 (57%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRT
Sbjct: 87 MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
IRYPDPLIK ND+I+LD+ KI++ G V G
Sbjct: 147 IRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFE 206
Query: 615 LCTSRTPRDTPSATRLNNVFIIGKGTK 695
+ ATRL NV+ IGKGTK
Sbjct: 207 TIHIQDSTGHEFATRLGNVYTIGKGTK 233
Score = 73.3 bits (172), Expect = 5e-12
Identities = 30/51 (58%), Positives = 39/51 (76%)
Frame = +2
Query: 509 FIKFESGNLCMITGSRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFGNEV 661
FIKF+ GN+ M+TG RN GRVG I +RE+H GSF+ +HI+DSTGH F +
Sbjct: 172 FIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRL 222
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 133 bits (322), Expect = 3e-30
Identities = 59/98 (60%), Positives = 70/98 (71%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
ARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV
Sbjct: 2 ARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAGLWMLSQLRRLMNCF 294
IVK R IK+DGK+RTD YP G + + R F
Sbjct: 62 TMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99
Score = 117 bits (282), Expect = 2e-25
Identities = 60/147 (40%), Positives = 85/147 (57%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRT
Sbjct: 87 MDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
IRYP P ++ ND+I+L++ T KI+D G G P
Sbjct: 147 IRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVIVKREVHPGSFE 206
Query: 615 LCTSRTPRDTPSATRLNNVFIIGKGTK 695
+ + + TRLNNVF+IGKGT+
Sbjct: 207 IVHIKDAKGNTFTTRLNNVFVIGKGTE 233
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 124 bits (298), Expect = 3e-27
Identities = 59/148 (39%), Positives = 87/148 (58%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD R
Sbjct: 198 LMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSR 257
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPS 611
TIR+P+P IK+ D+++ D+ KI + + L G ++ G
Sbjct: 258 TIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSF 317
Query: 612 TLCTSRTPRDTPSATRLNNVFIIGKGTK 695
+C + + ATRL N+F++G+G K
Sbjct: 318 DICHVKDAKGNAFATRLGNIFVLGQGKK 345
Score = 86.2 bits (204), Expect = 7e-16
Identities = 56/129 (43%), Positives = 71/129 (55%), Gaps = 31/129 (24%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLD-------------------------KLGGVY----APRPS 93
ARGPKKHLKR+NAPK+WML+ KL +Y A RPS
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 94 TGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGLWMLS 267
GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP GL +
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVV 202
Query: 268 QLRRLMNCF 294
++ + F
Sbjct: 203 RIEKTDQSF 211
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 124 bits (298), Expect = 3e-27
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 AHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 181 LKIVKQRLIKVDGK 222
KI Q IK+DGK
Sbjct: 62 KKIRMQHFIKMDGK 75
Score = 123 bits (296), Expect = 5e-27
Identities = 60/128 (46%), Positives = 76/128 (59%)
Frame = +3
Query: 306 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 485
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 486 IATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPSTLCTSRTPRDTPSATRLN 665
+ T KI D G G + P + + ATRL+
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLS 195
Query: 666 NVFIIGKG 689
N+F+IGKG
Sbjct: 196 NIFVIGKG 203
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 121 bits (292), Expect = 1e-26
Identities = 60/82 (73%), Positives = 66/82 (80%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV
Sbjct: 13 AFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDEV 71
Query: 181 LKIVKQRLIKVDGKVRTDPTYP 246
KI Q IKVDGK+RTD P
Sbjct: 72 KKICMQWFIKVDGKIRTDNNLP 93
Score = 116 bits (278), Expect = 7e-25
Identities = 51/88 (57%), Positives = 66/88 (75%)
Frame = +3
Query: 240 LSCWIMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 419
L WIMDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV
Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151
Query: 420 HDGRTIRYPDPLIKVNDSIQLDIATTKI 503
HD T+R+PD LIKVND+IQ+D+ T KI
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI 179
Score = 66.9 bits (156), Expect = 5e-10
Identities = 25/46 (54%), Positives = 36/46 (78%)
Frame = +2
Query: 512 IKFESGNLCMITGSRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTF 649
+KF++GNLC++TG N GR+G I +RERHP SFD H+KD+ ++F
Sbjct: 182 LKFDTGNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSF 227
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 120 bits (288), Expect = 5e-26
Identities = 61/148 (41%), Positives = 89/148 (60%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGR
Sbjct: 86 VMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGR 145
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPS 611
TIR+P+ LIK NDSI LD+ K++D S G+ + G
Sbjct: 146 TIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIGVFINTIGGQGSD 205
Query: 612 TLCTSRTPRDTPSATRLNNVFIIGKGTK 695
++ + + +T+ N+F+IGKGTK
Sbjct: 206 SIVCLKDFNGSSFSTQTKNLFVIGKGTK 233
Score = 113 bits (271), Expect = 5e-24
Identities = 50/85 (58%), Positives = 65/85 (76%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 2 SRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRES 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAGL 255
L I+K+ I VDGKVR D +PAG+
Sbjct: 62 LNILKKNEIYVDGKVRADKNFPAGV 86
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 509 FIKFESGNLCMITGSRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFGNEVE 664
FIKF G+LC++ N+GR+G ++ GS IV +KD G +F + +
Sbjct: 172 FIKFSIGSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTK 223
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 118 bits (285), Expect = 1e-25
Identities = 56/92 (60%), Positives = 67/92 (72%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 199 RLIKVDGKVRTDPTYPAGLWMLSQLRRLMNCF 294
RL+KVDGKVRT+ YP GL + +L + F
Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
Score = 103 bits (246), Expect = 6e-21
Identities = 52/145 (35%), Positives = 79/145 (54%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGR
Sbjct: 100 LMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGR 159
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPS 611
TI Y DP ++V+D+++ +I T ++ G G A
Sbjct: 160 TISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASF 219
Query: 612 TLCTSRTPRDTPSATRLNNVFIIGK 686
+ + ATR+ NVF+IG+
Sbjct: 220 DIVHLKDTSGAVFATRIMNVFVIGE 244
Score = 56.4 bits (130), Expect = 6e-07
Identities = 24/50 (48%), Positives = 34/50 (68%)
Frame = +2
Query: 512 IKFESGNLCMITGSRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFGNEV 661
IKF+ G++ M+T N+GRVGTI E+ SFDIVH+KD++G F +
Sbjct: 187 IKFKVGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRI 236
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 113 bits (271), Expect = 5e-24
Identities = 52/80 (65%), Positives = 59/80 (73%)
Frame = +1
Query: 13 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 192
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 193 KQRLIKVDGKVRTDPTYPAG 252
+Q L+ VD R D YPAG
Sbjct: 63 RQGLVHVDNHPRRDGKYPAG 82
Score = 94.3 bits (224), Expect = 3e-18
Identities = 53/144 (36%), Positives = 69/144 (47%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG
Sbjct: 84 MDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHR 143
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
IRYPDP + D+I ++ K +D G V G P
Sbjct: 144 IRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRIGEIVKVECHPGAFN 203
Query: 615 LCTSRTPRDTPSATRLNNVFIIGK 686
+ + ATR N+F+IGK
Sbjct: 204 IAHLKDASGAEFATRAANIFVIGK 227
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 89.4 bits (212), Expect = 7e-17
Identities = 40/84 (47%), Positives = 57/84 (67%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+
Sbjct: 4 GHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSI 63
Query: 187 IVKQRLIKVDGKVRTDPTYPAGLW 258
I+ ++ IKV+G+VRT+ +P GL+
Sbjct: 64 ILAEKNIKVNGRVRTNSHFPVGLF 87
Score = 75.8 bits (178), Expect = 1e-12
Identities = 36/86 (41%), Positives = 59/86 (68%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+ DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G
Sbjct: 86 LFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGL 144
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMD 509
+IR+ DP I + +I++ T+K+++
Sbjct: 145 SIRFCDPAIDLGYTIKISNETSKVIE 170
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 83.8 bits (198), Expect = 4e-15
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 183
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 184 KIVKQRLIKVDGKVRTDPTYPAGLWMLSQLRR 279
KI+ + I VDG VR +P +P G+ + ++ R
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPR 98
Score = 41.9 bits (94), Expect = 0.015
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Frame = +3
Query: 234 PYLSCWIMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 413
P IMDVV I +T + +R++ + R + I+ EEA+ K+C++K +
Sbjct: 84 PKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQI 143
Query: 414 VTHDGRT--IRYPDP------LIKVNDSIQLDI 488
HDG+ + DP + V DS+ L++
Sbjct: 144 TMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLEL 176
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 79.0 bits (186), Expect = 1e-13
Identities = 37/84 (44%), Positives = 52/84 (61%)
Frame = +1
Query: 4 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 183
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 184 KIVKQRLIKVDGKVRTDPTYPAGL 255
KI++ I +DG R + +PAGL
Sbjct: 64 KIIQTGKILIDGLKRKEYKHPAGL 87
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 75.4 bits (177), Expect = 1e-12
Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +1
Query: 19 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 195
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 196 QRLIKVDGKVRTDPTYPAGL 255
+ +KVDG VR D +P GL
Sbjct: 63 RGYVKVDGVVRRDYKFPVGL 82
Score = 37.9 bits (84), Expect = 0.24
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDV+ I T E++R++ D + + I+ EEA KL +V+ L HDGR
Sbjct: 82 LMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGR 141
Query: 432 ---TIRYPDPLIKVNDSIQLDIATTKI 503
T IK DS+ D+ I
Sbjct: 142 NLITTLEAGKQIKTFDSVLYDLRNKAI 168
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 72.1 bits (169), Expect = 1e-11
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 199 RLIKVDGKVRTDPTYPAGLWMLSQL 273
+KVDGKVR D YP GL + +L
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIEL 87
Score = 40.7 bits (91), Expect = 0.034
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 4/149 (2%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDV+ + NE +R+I D RI EA K+C+++ L HDGR
Sbjct: 81 LMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGR 140
Query: 432 TI---RYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCP-ARDI 599
I + + S+ +++ K+MD + P V + V G R
Sbjct: 141 NIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTLINWVRSF 200
Query: 600 PAPSTLCTSRTPRDTPSATRLNNVFIIGK 686
+ T + +D+ T LN + +IGK
Sbjct: 201 RKRDAIATVKA-KDSEFRTVLNYLLVIGK 228
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 70.5 bits (165), Expect = 4e-11
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +1
Query: 4 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 183
+G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E
Sbjct: 6 KGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEAR 65
Query: 184 KIVKQRLIKVDGKVRTDPTYPAGL 255
+I+ R+I+VDG+V TD +P GL
Sbjct: 66 RILASRVIEVDGRVVTDYKFPVGL 89
Score = 40.7 bits (91), Expect = 0.034
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDV+ I + +R++ D + I PEEA YKL +++R T HDGR
Sbjct: 89 LMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGR 148
Query: 432 TI 437
+
Sbjct: 149 NV 150
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/82 (37%), Positives = 47/82 (57%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K
Sbjct: 5 GGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARK 64
Query: 187 IVKQRLIKVDGKVRTDPTYPAG 252
++ + +VDG VR D +P G
Sbjct: 65 LISEGHFRVDGVVRKDYKFPVG 86
Score = 39.5 bits (88), Expect = 0.078
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
MDV+ + T E FR++ Y VK F +H I EE K +++ T L HDGR
Sbjct: 88 MDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGR 146
Query: 432 TI--RYPDPLIKVND 470
I R DP V D
Sbjct: 147 NILVRVKDPRNPVED 161
Score = 39.1 bits (87), Expect = 0.10
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +2
Query: 506 GFIKFESGNLCMITGSRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFGNEVE 664
G IKF G + +I G RN+GRVG + S ++ G +V ++D++G+ F ++
Sbjct: 180 GHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLD 233
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 64.1 bits (149), Expect = 3e-09
Identities = 30/80 (37%), Positives = 46/80 (57%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 199 RLIKVDGKVRTDPTYPAGLW 258
+ VDGKVR D Y G++
Sbjct: 65 GKVLVDGKVRKDYRYTVGMF 84
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 60.1 bits (139), Expect = 5e-08
Identities = 28/82 (34%), Positives = 41/82 (50%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 187 IVKQRLIKVDGKVRTDPTYPAG 252
I+ + VDG+V D +P G
Sbjct: 65 IINSGNVLVDGRVIKDYKFPVG 86
Score = 56.4 bits (130), Expect = 6e-07
Identities = 31/95 (32%), Positives = 49/95 (51%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MD++ I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+
Sbjct: 88 MDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKN 145
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV 539
+ + V D I L + +I + L G CV
Sbjct: 146 VIIDENDYNVGDVIDLKVPDHEINEVFELKEGACV 180
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 57.2 bits (132), Expect = 4e-07
Identities = 31/79 (39%), Positives = 41/79 (51%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 199 RLIKVDGKVRTDPTYPAGL 255
+ VDGKVR D YP GL
Sbjct: 63 GKVLVDGKVRRDYKYPVGL 81
Score = 35.5 bits (78), Expect = 1.3
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDVV I + R+I D T I+ E+AKYK ++ T V L DGR
Sbjct: 81 LMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGR 140
Query: 432 TI 437
I
Sbjct: 141 NI 142
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 56.8 bits (131), Expect = 5e-07
Identities = 26/79 (32%), Positives = 43/79 (54%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 199 RLIKVDGKVRTDPTYPAGL 255
R + VDG++ TD GL
Sbjct: 65 RQVLVDGRIETDLGRGVGL 83
Score = 39.5 bits (88), Expect = 0.078
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDV+++ + + FR I DV G+ I+ + A KLC+V +T + HDGR
Sbjct: 83 LMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGR 140
Query: 432 TIRYPD-PLIKVNDSIQLDIATTKIMDSSSLSPG 530
I D L D++ + + + S G
Sbjct: 141 NILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKG 174
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 55.6 bits (128), Expect = 1e-06
Identities = 27/80 (33%), Positives = 41/80 (51%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 199 RLIKVDGKVRTDPTYPAGLW 258
+ VDG R D +P GL+
Sbjct: 63 GKVLVDGISRKDLRFPVGLF 82
Score = 36.7 bits (81), Expect = 0.55
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+ DV+++ NE +R++ D KGR ++++ E KLC++ T L +DG
Sbjct: 81 LFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLNDGT 139
Query: 432 TI 437
I
Sbjct: 140 NI 141
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 54.8 bits (126), Expect = 2e-06
Identities = 32/92 (34%), Positives = 45/92 (48%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDV+ I E +R++Y+ +G + + T E A KL KV+ P N L THDGRT
Sbjct: 83 MDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRT 140
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPG 530
D KV D + + KI + + PG
Sbjct: 141 FITDDKSKKVGDVWAVSVPDMKISEIIKMQPG 172
Score = 37.1 bits (82), Expect = 0.42
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +1
Query: 25 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 204
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 205 IKVDGKVRTDPTYPAG 252
+KVDGK + + G
Sbjct: 66 VKVDGKTVREKKFAVG 81
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 54.4 bits (125), Expect = 3e-06
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 199 RLIKVDGKVRTDPTYPAGL 255
+ VDG R D +P GL
Sbjct: 64 GNVLVDGVARKDLRFPVGL 82
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 54.0 bits (124), Expect = 3e-06
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 13 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 189
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 190 VKQRLIKVDGKVRTDPTYPAGLW 258
+ + VDG+ D +P GL+
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLF 88
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 53.6 bits (123), Expect = 4e-06
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +1
Query: 25 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 204
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 205 IKVDGKVRTD 234
+ ++G + TD
Sbjct: 64 VLLNGHIVTD 73
Score = 33.1 bits (72), Expect = 6.8
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 389
+ D++S K ++ + ++ D KGR + I+ + AK +L KV T
Sbjct: 80 VFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 50.0 bits (114), Expect = 6e-05
Identities = 28/89 (31%), Positives = 48/89 (53%)
Frame = +1
Query: 16 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 195
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 196 QRLIKVDGKVRTDPTYPAGLWMLSQLRRL 282
QR + V+G+ D G++ + + +L
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKL 90
Score = 41.5 bits (93), Expect = 0.019
Identities = 25/81 (30%), Positives = 37/81 (45%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+ D+VSI K + +R+ DVKG I E AK +LCK++ T L G
Sbjct: 81 VFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGA 140
Query: 432 TIRYPDPLIKVNDSIQLDIAT 494
+ D K DS+ + + T
Sbjct: 141 NV-LADNTYKAKDSVVVTLGT 160
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MD +S N+ +R++ G+ T++ I E K+CKV ++ ++T D R
Sbjct: 86 LMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLR 145
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGT-CV*SR 548
++ IKV DS+ + +I+ + G+ C+ +R
Sbjct: 146 ELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITR 185
Score = 42.3 bits (95), Expect = 0.011
Identities = 24/85 (28%), Positives = 41/85 (48%)
Frame = +1
Query: 1 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 2 AKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEA 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAGL 255
K+VK + V+GK +P L
Sbjct: 62 QKVVKTGFLYVNGKKCLSHKFPISL 86
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 46.8 bits (106), Expect = 5e-04
Identities = 23/80 (28%), Positives = 41/80 (51%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 199 RLIKVDGKVRTDPTYPAGLW 258
+ ++GK +D P G++
Sbjct: 63 DNVLINGKAISDEERPVGMF 82
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/91 (23%), Positives = 45/91 (49%)
Frame = +1
Query: 25 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 204
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 205 IKVDGKVRTDPTYPAGLWMLSQLRRLMNCFV 297
+KVDG++ D +P G + + L N ++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
Score = 40.7 bits (91), Expect = 0.034
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGR 431
MDV+SI+ + ++YD KG+ I + P KL K VK+ G + L HDG+
Sbjct: 84 MDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGK 142
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSPG 530
TI I +D + + I +I + ++ G
Sbjct: 143 TIVTDRKDINTSDVLLMKIPDLEIENVLKIAEG 175
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 40.3 bits (90), Expect = 0.045
Identities = 25/86 (29%), Positives = 37/86 (43%)
Frame = +1
Query: 16 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 195
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 196 QRLIKVDGKVRTDPTYPAGLWMLSQL 273
++VDG RT + GL + +L
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVEL 93
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 39.9 bits (89), Expect = 0.059
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +1
Query: 25 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 204
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 205 IKVDGKV 225
+ VDGKV
Sbjct: 66 VMVDGKV 72
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 35.9 bits (79), Expect = 0.96
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = -3
Query: 476 DGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID* 297
+G+ D + + +GAA+++ R+ L QLVL D V ES+L ++D
Sbjct: 121 NGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDE 180
Query: 296 TKQFISLLN*DNI 258
+ FI+L + D++
Sbjct: 181 PEVFIALFDGDDV 193
Score = 35.5 bits (78), Expect = 1.3
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -1
Query: 634 GVLDVHNVEGAGMSLAGHDGAHAPQVTASRDHTQVPGLKLD 512
GVL VHN EG + LA D A V + DH Q ++LD
Sbjct: 68 GVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVELD 108
>UniRef50_Q3W3I5 Cluster: Putative uncharacterized protein; n=1;
Frankia sp. EAN1pec|Rep: Putative uncharacterized
protein - Frankia sp. EAN1pec
Length = 188
Score = 35.5 bits (78), Expect = 1.3
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 495 TKIMDSSSLSPGTCV*SREAVTWGAW-APSCPARDIPAPSTLCTSRTPRDTPSATR 659
TK+ DS+S +PG S W AW A CP R +P+P+T T+ TP S R
Sbjct: 131 TKLEDSAS-TPG----STAWTAWTAWTATPCP-RSLPSPATCATTTTPSSLDSRCR 180
>UniRef50_Q0LG54 Cluster: Putative uncharacterized protein
precursor; n=1; Herpetosiphon aurantiacus ATCC
23779|Rep: Putative uncharacterized protein precursor -
Herpetosiphon aurantiacus ATCC 23779
Length = 411
Score = 35.5 bits (78), Expect = 1.3
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +3
Query: 573 APSCPARDIPAPSTLCTSRTPRDTPSATRLNNV 671
A P R I AP T +RTPR TP+AT +N V
Sbjct: 293 ADDVPIRIIGAPGTPTPTRTPRPTPNATAINQV 325
>UniRef50_Q6AQX9 Cluster: Putative uncharacterized protein; n=1;
Desulfotalea psychrophila|Rep: Putative uncharacterized
protein - Desulfotalea psychrophila
Length = 3413
Score = 35.1 bits (77), Expect = 1.7
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -1
Query: 679 IMNTLFNLVAEGVSRGVLDVHNVEGAGMSLAGHDGAHAPQVTASRD-HTQVPGLKLDESI 503
+ TL + V EGV+ G V G G + G DG H + H VP K+ ESI
Sbjct: 2864 LKQTLLDTVGEGVAHGDASVLMASGDGGIVLGADGGHIQSILVDGTLHKYVPVTKVTESI 2923
>UniRef50_Q9AN20 Cluster: ID622; n=1; Bradyrhizobium japonicum|Rep:
ID622 - Bradyrhizobium japonicum
Length = 212
Score = 34.3 bits (75), Expect = 2.9
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = -1
Query: 682 PIMNTLFNLVAEGVSRGVLDVHNVEGAGMSLAGHDGAHAPQVTASRDHTQVPGLKLDESI 503
P T++N + +G R V+D + G + A + A + +P +KLDE+I
Sbjct: 38 PRTGTVYNTIMDGRFRDVVDGF-FDSCGYRVHRDPEAQWAGIVAMDEDVPLPRMKLDETI 96
Query: 502 IFVVAMSNWMESLTL 458
+ +V + W + + +
Sbjct: 97 VMLVLAAYWQQEVNV 111
>UniRef50_UPI000050F8A4 Cluster: COG4585: Signal transduction
histidine kinase; n=1; Brevibacterium linens BL2|Rep:
COG4585: Signal transduction histidine kinase -
Brevibacterium linens BL2
Length = 652
Score = 33.5 bits (73), Expect = 5.1
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = -1
Query: 679 IMNTLFNLVAEGVSRGVLDVHN-VEGAGMSLAGHDGAHAPQVTAS--RDHTQVPGLKLDE 509
+++ + L ++ G+ H+ V AG + AG HAP TAS ++VPGL
Sbjct: 183 VLHAMARLEIAAITAGLAPGHDEVTAAGKARAGDFTGHAPDGTASATSSGSRVPGLPAAN 242
Query: 508 SIIFVVAMSNWMESLTLISG 449
S + A W +++ G
Sbjct: 243 SFLTRAAGEGWFWLISIFVG 262
>UniRef50_A1K510 Cluster: Conserved hypothetical membrane protein;
n=1; Azoarcus sp. BH72|Rep: Conserved hypothetical
membrane protein - Azoarcus sp. (strain BH72)
Length = 232
Score = 33.1 bits (72), Expect = 6.8
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 100 PHKLRECLPLV---IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGLWMLSQ 270
PH+ ECL + + L R KY L ++ ++ +++ L + +VR DP P LW L +
Sbjct: 129 PHENIECLEVFHACLLLGFRGKYLLDDSDRIRYLQRTLAQELQRVRGDPQTPPALWKLPE 188
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 9.0
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +1
Query: 52 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 213
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 791,018,685
Number of Sequences: 1657284
Number of extensions: 17511713
Number of successful extensions: 54700
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 51582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54626
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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