Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0708
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             164   5e-41
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   4.8  
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      28   6.4  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    28   8.4  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  164 bits (399), Expect = 5e-41
 Identities = 74/84 (88%), Positives = 78/84 (92%)
 Frame = +1

Query: 1   ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
           ARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV
Sbjct: 426 ARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEV 485

Query: 181 LKIVKQRLIKVDGKVRTDPTYPAG 252
            KIVKQRLIK+DGKVRTD TYPAG
Sbjct: 486 KKIVKQRLIKIDGKVRTDTTYPAG 509



 Score =  140 bits (339), Expect = 1e-33
 Identities = 72/147 (48%), Positives = 88/147 (59%)
 Frame = +3

Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
           MDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RT
Sbjct: 511 MDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDART 570

Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
           IRYPDP IKVND++ +DI T K++D      G           G                
Sbjct: 571 IRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFD 630

Query: 615 LCTSRTPRDTPSATRLNNVFIIGKGTK 695
           +   +       ATRL N+F+IGKG K
Sbjct: 631 IVHVKDATGHQFATRLTNIFVIGKGNK 657



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 29/51 (56%), Positives = 40/51 (78%)
 Frame = +2

Query: 509 FIKFESGNLCMITGSRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFGNEV 661
           +IKF++GN+ M+ G RN+GRVG +  RE+H GSFDIVH+KD+TGH F   +
Sbjct: 596 YIKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRL 646


>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 642 CPVESLMCTMS-KEPGCLSRDTMVPTRPKLRLPVIIH 535
           C  ++ +CT+  KEPG    DT  PTR K +LP  +H
Sbjct: 556 CTADNDLCTVCCKEPG--KDDTCTPTRDKTQLPKQVH 590


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +3

Query: 141 EES--SEVCFDRKRSPENCE 194
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +3

Query: 240 LSCWIMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 419
           L  W+    S  K N ++  I D+  R  I  +TP+    K C+V R++TGP    +++ 
Sbjct: 261 LGGWVATRASGMKKN-VYGNIEDIIVR--IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMG 317

Query: 420 HDG 428
            +G
Sbjct: 318 SEG 320


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 140 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPR 3
           RK +R     N++G ++GLG+  PP  + I     F K  K F  PR
Sbjct: 60  RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPR 106


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -3

Query: 218 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 102
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,171,209
Number of Sequences: 59808
Number of extensions: 580021
Number of successful extensions: 1589
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1588
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)