Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0708
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   138   3e-33
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.6  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    28   7.4  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    28   7.4  
Z81496-4|CAI79124.1|   77|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  138 bits (335), Expect = 3e-33
 Identities = 71/149 (47%), Positives = 89/149 (59%)
 Frame = +3

Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
           MDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRT
Sbjct: 86  MDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRT 145

Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSPGTCV*SREAVTWGAWAPSCPARDIPAPST 614
           IRYPDP +KVND+I  +I+T KI DS    PG           G          +P  S 
Sbjct: 146 IRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASD 205

Query: 615 LCTSRTPRDTPSATRLNNVFIIGKGTKGV 701
           +   +       ATR++NVF+IGKG K +
Sbjct: 206 IIHIKDSAGHSFATRISNVFVIGKGNKAL 234



 Score =  126 bits (305), Expect = 1e-29
 Identities = 60/97 (61%), Positives = 70/97 (72%)
 Frame = +1

Query: 4   RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 183
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 184 KIVKQRLIKVDGKVRTDPTYPAGLWMLSQLRRLMNCF 294
           KI+ QR+++VDGKVRT   +P G   +  + R    F
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 315 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 446
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +1

Query: 544 HGKP*LGARGHHRVPRETSRLLRHCAHQGLHGTH 645
           HG    G+ G H     T   L H  H G HGTH
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTH 676


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 472  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 308
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 532 LVYDHGKP*LGARGHHRVPRETSRLLRH 615
           LV+D G+  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 532 LVYDHGKP*LGARGHHRVPRETSRLLRH 615
           LV+D G+  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>Z81496-4|CAI79124.1|   77|Caenorhabditis elegans Hypothetical
           protein F09C6.13 protein.
          Length = 77

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 515 KFESGNLCMITGSRNLGRVGTIVSRERHPGSFDIVHIK 628
           K +SGN  + T +R++ R+   V  E H    D+ H++
Sbjct: 12  KVDSGNTTINTTNRSINRIDNSVDYESHGLDTDLEHLQ 49


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 694 FVPLPIMNTLFNLVAEGVSRGVLDVHNVE 608
           F+PLPI+N    L +E + R +  + N E
Sbjct: 539 FIPLPIVNLYIRLASESIYRDLGKIGNFE 567


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,991,839
Number of Sequences: 27780
Number of extensions: 407144
Number of successful extensions: 1197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)