Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0708
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.17 
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    25   0.70 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   1.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   8.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.6  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 353 SLLRGDTVDCESALNIID*TKQFISLLN*DNIH 255
           SLL+ +TV C+ A++++      + +++ DNIH
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIH 413


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 591 RDIPAPSTLCTSRTPRDTPSATRLNNVFIIGKGTKGV 701
           RD+P  ST  T+   RDT +   +  +   G+G+K +
Sbjct: 137 RDLPGKSTTTTAEVKRDTINPEDVILIRRTGEGSKPI 173


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 591 RDIPAPSTLCTSRTPRDTPSATRLNNVFIIGKGTKGV 701
           RD+P  ST  T    RDT +   +  +   G+G+K +
Sbjct: 137 RDLPGKSTTTTVEVKRDTINPEDVILIRRTGEGSKPI 173


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -3

Query: 464 DFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQF 285
           D    +WI  G  +M +    + R G+  +  T L+ ++L    + CE  +NI    K +
Sbjct: 57  DVHVMIWIGFGF-LMTF----LRRYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSY 111

Query: 284 ISL 276
           +SL
Sbjct: 112 LSL 114


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 625 DVHNVEGAGMSLAGHD 578
           DVH V GAG  +  HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 148 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 249
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 158 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 57
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 591 RDIPAPSTLCTSRTPRDTPSATRLNNVFIIGKGTKGV 701
           RD+P  ST  T    RD  +   +  +   G+G+K +
Sbjct: 137 RDLPGKSTTTTVEVKRDIINPEDVIPIRRTGEGSKPI 173


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +2

Query: 428 PHHPLSRPTYQSQRFHPVRHCNYEDYGFIKFESG 529
           PH   +   +    F P +  N   Y F+ F +G
Sbjct: 451 PHIYPNPDVFDPDNFLPEKTANRHYYAFVPFSAG 484


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 36  RSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPE 143
           +S++ DV ++WR +  E  NR+    R++    + E
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDPRMILTEAYTE 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,419
Number of Sequences: 438
Number of extensions: 5114
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)