Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0707
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   9.6  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 311 TVTEVSFFGIICKFPVSRRV*SHNIYTY 394
           ++++ S+FG IC    +RRV S    TY
Sbjct: 513 SLSDGSYFGEICLLTNARRVASVRAETY 540


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 311 TVTEVSFFGIICKFPVSRRV*SHNIYTY 394
           ++++ S+FG IC    +RRV S    TY
Sbjct: 481 SLSDGSYFGEICLLTNARRVASVRAETY 508


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 361 RHWEFANYSKKTHLRNSL 308
           R W+F  YSK   L N +
Sbjct: 382 RQWQFDVYSKDVELANKM 399


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 316 YGGEFFWNNLQIPSVETSLEP 378
           YGG+F  + +  P+V  S EP
Sbjct: 88  YGGQFVRDLIWTPTVYVSNEP 108


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -1

Query: 370 NSSRHWEFANYSKKTHLRNSLSFGAILPIAKP 275
           N++  + + NY+KK + +N +     +P+  P
Sbjct: 326 NNNYKYNYNNYNKKLYYKNYIINIEQIPVPVP 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,422
Number of Sequences: 438
Number of extensions: 3754
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)