Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0705
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    37   0.002
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    31   0.12 
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    29   0.64 
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    26   5.9  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   5.9  

>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +1

Query: 505 GFDQISNNDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 621
           GFD+++   IS+ VS+      S  AVGNL  +PY DEL
Sbjct: 388 GFDKVTPASISKVVSSLLAKPASTVAVGNLDVLPYYDEL 426


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +2

Query: 260 SYSDNGLFGVVL---SVPKDEXXXXXXXXXXXXXTSLSADAIKAGKNQLKTQVLNEADTG 430
           SYSD GL+G+ L   ++ + +             T  +   ++  K QL+  +L   D+ 
Sbjct: 324 SYSDTGLWGIYLVTENLGRIDDLVHFTLQNWARLTVATRAEVERAKAQLRASLLLSLDST 383

Query: 431 SSLAESLAAQGLYTGSVRSAVDI 499
           +++AE +  Q L TG   S  ++
Sbjct: 384 TAIAEDIGRQLLTTGRRMSPQEV 406


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +2

Query: 260 SYSDNGLFGVVLSVPKDEXXXXXXXXXXXXXT---SLSADAIKAGKNQLKTQVLNEADTG 430
           SY+D+GLFG+ +++  D                  S++++  +  KNQLK+ +L   ++ 
Sbjct: 352 SYTDSGLFGMFVTILDDAAHLAAPLIIRELCNTVLSVTSEETERAKNQLKSSLLMNLESR 411

Query: 431 SSLAESLAAQ 460
               E L  Q
Sbjct: 412 MISLEDLGRQ 421


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 682 C*FIKVGNRLRNKLRF 635
           C  IK+GN LRNK RF
Sbjct: 136 CDIIKIGNILRNKERF 151


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 592 SFQQRQLKSCSLPHSRQPARCHYWISGRILG 500
           S+++R   SCS+ +SR P+  H      +LG
Sbjct: 763 SYRRRLSMSCSVSYSRSPSPLHALFLALLLG 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,321
Number of Sequences: 5004
Number of extensions: 38707
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)