Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0705
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1410 + 37116414-37116695,37116796-37116902,37117148-371176...    34   0.093
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    30   1.5  
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583...    29   4.6  
02_04_0238 + 21186072-21186883,21187315-21189346                       28   6.1  

>01_06_1410 +
           37116414-37116695,37116796-37116902,37117148-37117649,
           37118211-37118326,37119007-37119211
          Length = 403

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = -3

Query: 567 LVLCRIRDSLRDVIIGYLVESLAMSTAERTEPVYKPCAANDSASDDPVSASFNTCVFN 394
           LV  +I D+++D+ +    +SLA +  ++ +P    C+AN + SD  + A    C FN
Sbjct: 186 LVKQKICDAMQDLHVNNDNDSLASNICDQLDPASPKCSANSTMSDLVLPARDIICAFN 243


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 356 SLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAV 493
           ++  D +K+ KN+ K +  +  D GSSL   L  +   TGSV   V
Sbjct: 423 TVGEDGLKSSKNKTKRKYSDVVDDGSSLMNWLNGKKKRTGSVHHTV 468


>03_02_0138 +
           5837813-5838490,5839000-5839164,5839289-5839426,
           5839496-5839647,5839754-5839862,5840551-5840649,
           5840739-5840804,5840891-5840998,5841820-5841906
          Length = 533

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +2

Query: 254 HVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXXTSLS-----ADAIKAGKNQLKTQVLNE 418
           + +Y D GLFG V +V K +             + LS      D I+A +NQLK+ +   
Sbjct: 398 NTNYKDTGLFG-VYAVAKPDCLDDLAFAIMQEISKLSYRVTEEDVIRA-RNQLKSSIQLH 455

Query: 419 ADTGSSLAESLAAQGLYTG 475
            D  +++ E +  Q L  G
Sbjct: 456 LDGSTAVVEDIGRQLLIYG 474


>02_04_0238 + 21186072-21186883,21187315-21189346
          Length = 947

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/57 (19%), Positives = 29/57 (50%)
 Frame = -1

Query: 629 RVYNSSI*GTNAKFPTAPIEILFFAAFETACEMSLLDIWSNPWRCQQQSEQSRCISL 459
           R YN+++  +  +  T  +  ++   + ++ +   LD+W  P    Q+   ++C+S+
Sbjct: 708 RSYNNNLVSSLGRLGTCSLRSIYIQGYNSSLQDFSLDLWCPPPSLLQKFVANKCLSV 764


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,846,560
Number of Sequences: 37544
Number of extensions: 300358
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)