Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0705
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)         35   0.054
SB_57199| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   3.6  
SB_26680| Best HMM Match : GATA (HMM E-Value=2.3)                      29   4.7  
SB_55523| Best HMM Match : Peptidase_M16_C (HMM E-Value=3.1e-13)       28   8.3  
SB_10704| Best HMM Match : LMP (HMM E-Value=1.2)                       28   8.3  

>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
          Length = 593

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
 Frame = +2

Query: 233 PIRSGRIHVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXXT----SLSADAIKAGKNQLK 400
           P     +++SYSD+GLFG        E                   +S D +   KNQLK
Sbjct: 288 PFAVSALNMSYSDSGLFGCYFIASPAEIEKVMKASLGQFAKVAKGEVSDDELLRAKNQLK 347

Query: 401 TQVLNEADTGSSLAESLAAQG 463
             +L   ++G +  E + AQG
Sbjct: 348 ASLLMNNESGQTNFEDIGAQG 368


>SB_57199| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 374

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 567 LVLCRIRDSLRDVIIGYLVESLAMSTAERTEPVYKPCAANDSA 439
           LVLC++   L DV     ++SL     +R   V  P  AN SA
Sbjct: 101 LVLCKVMYFLLDVSTAVSIQSLVAMAIDRYYAVSHPLKANQSA 143


>SB_26680| Best HMM Match : GATA (HMM E-Value=2.3)
          Length = 193

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 580 RQLKSCSLPHSRQPARCH 527
           RQ+K   LPH RQPA  H
Sbjct: 118 RQVKESPLPHRRQPAHAH 135


>SB_55523| Best HMM Match : Peptidase_M16_C (HMM E-Value=3.1e-13)
          Length = 209

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 511 DQISNNDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 621
           + ++ +DI +  S    +K S+ A GNL F+P  +++
Sbjct: 150 ENVTMDDILRVSSRMLASKPSVAAFGNLTFLPKYEDI 186


>SB_10704| Best HMM Match : LMP (HMM E-Value=1.2)
          Length = 208

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 517 ISNNDISQAVSNAAKNKISIGAVGN 591
           ++  DISQ  +N A N++ I  VGN
Sbjct: 18  VNRPDISQVANNLADNRLDISQVGN 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,622,269
Number of Sequences: 59808
Number of extensions: 322753
Number of successful extensions: 695
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)